Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0814 ATGTTAGGAAAGTTTTACGACAAACAGAGAGAAAGCAAAAGAGTGGGGGGAGAGAGAAGGAGAGATAACGTGACAATGGCCGGCGGAGCTGCCAGCGCTGTTGCCGGAGATCGTACTCCGGAGCTCATTGGTCTAGTTCATGACATTGTTGGAATGTGCGGTGGAGTTGGGGGATCCTCTTCTTCTACTGCCGTTGAAGCCGATGCTATGTTCAAGAAGGACTGCACCGATCTGGTTCGTCGGATCTCTTTACTTACCTATTTGTTCGAGGAGATTAGGGACTCGAAGAAGGCCGTCATTGATTCTGGAAACTCGGATGCTTCTACTTCGTCCACTGGCTCTGCATCTTCCTGGTCCTCTGATCTGGTGCTCGCTCTCCACTCAGCTAAGCGCCTCATTTCAGTCGCTAGGAACTTCCGTTCTAATTCATCTTCTGATGGAGCTGCCAAGACAATTGTATTCCAATTTCAGTGTGTGACATGGAAATTGGAAAAGCTATTGAGCGTCCTACCCTATGATGATCTAGACATATCAGAGGAAGTCAAGGAACAGGTGGAGTTGGTCAGAACACAATTGAGACGAGCCACTGAAAAATATGAATTTATGATTTCAAAGCTGTCATCTTTTGACTTATCTCAGCCAATGGATCTAGAAATTAGTCAAAATCTTGGGAGATCTGTGAGTGGATTGCATAAACAGAATAGCTGTCCTGTTAAGTTATCAGATCTAGAAAGCACTACGAGAAGCAATGGATGGACAAGTTGCAGCACAAATCAGACAAGCCCTCGCTTGGAAAGGGCACAGAGCATCCCTGCATTGTCTGAGGTTTCATTATCAAATCTTGTTGATCCTGAAGGTCAAGAAAATTCTGTGAAAAAGAGTCTGACTGAAGTGAAAAAGCCAGAGGCAATTCTTATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCCACTGGTCAGACATATGAGAGATCTTACATCCAGAGATGGATAGATGGGGGAAATACAACATGTCCAAAAACTCAGCAGAAGCTCCAACATTTGATACTTACACCAAACTATGTGTTAAGGAGCCTTATAACTCAGTGGTGTATGGAGCACAATATTGAGCAGCCAACGGGACTTACAAATGGCAAGATAAAAAAGAGTGATGGGTCGTTCAGAGATGTTACAGGTGACATGGCAGCCATTGGAGCTCTTGTCCTGAAGCTCTCTAGCCAGAACATTGAGGAGCGTAGAGCAGCTGTTGCTGAAATTCGGTCACTTTCCAAACGAAGTACAGATAACAGAATACTAATTGCTGAAGCAGGAGCAATCCCAATTCTTGTTAACCTTTTAACATCAGAAGATGTGTTGACTCAAGAAAATGCCGTTACTTCCATTCTCAACCTCTCAATCTATGAGAACAACAAAGGACTTATAATGCTTGCTGGTGCCATCCCATCCATTGTCCAAATCCTTAGAGCTGGAACTATGGAAGCAAGAGAAAATGCAGCAGCAACTCTCTTCAGCTTGTCACTTGCAGATGAGAACAAAATAATTATCGGTGCCTCTGGAGCTATCCTTGCTTTGGTTGAGTTGCTCCAAAATGGGAGCCCTAGGGGGAAGAAGGACGCCGCGACAGCATTATTCAACTTGTGCATATATCAAGGAAACAAGGGCAGGGCCGTAAGAGCAGGGATCATTACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCGATGGTCGACGAAGCCTTGACAATAATGTCGGTTCTTGCTAGCCACCAAGAAGCAAAAGTTGCTATTGTAAAGGCCAGCACTATACCTGTTCTTATCGATCTATTGAGGAACGGATTGCCTCGAAACAAAGAAAACGCAGCTGCCATTTTACTTGCTTTGTGCAAGAGGGATCCCGAAAACCTGGCATGCATAAGCAGACTTGGTGCTGTCATACCTCTGACCGAACTCGCTCGAAGTGGCACGGAAAGGGCTAAAAGGAAAGCTACTTCACTATTAGAGCATCTTCGGAAGTTACAACATATTTGA 2058 0.4441 MLGKFYDKQRESKRVGGERRRDNVTMAGGAASAVAGDRTPELIGLVHDIVGMCGGVGGSSSSTAVEADAMFKKDCTDLVRRISLLTYLFEEIRDSKKAVIDSGNSDASTSSTGSASSWSSDLVLALHSAKRLISVARNFRSNSSSDGAAKTIVFQFQCVTWKLEKLLSVLPYDDLDISEEVKEQVELVRTQLRRATEKYEFMISKLSSFDLSQPMDLEISQNLGRSVSGLHKQNSCPVKLSDLESTTRSNGWTSCSTNQTSPRLERAQSIPALSEVSLSNLVDPEGQENSVKKSLTEVKKPEAILIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQKLQHLILTPNYVLRSLITQWCMEHNIEQPTGLTNGKIKKSDGSFRDVTGDMAAIGALVLKLSSQNIEERRAAVAEIRSLSKRSTDNRILIAEAGAIPILVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQILRAGTMEARENAAATLFSLSLADENKIIIGASGAILALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAVRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRNGLPRNKENAAAILLALCKRDPENLACISRLGAVIPLTELARSGTERAKRKATSLLEHLRKLQHI 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0814 685 SMART arm_5 641 681 IPR000225 GO:0005515
Alju12g0814 685 SMART arm_5 558 598 IPR000225 GO:0005515
Alju12g0814 685 SMART arm_5 517 557 IPR000225 GO:0005515
Alju12g0814 685 SMART arm_5 599 639 IPR000225 GO:0005515
Alju12g0814 685 SMART arm_5 435 475 IPR000225 GO:0005515
Alju12g0814 685 SMART arm_5 476 516 IPR000225 GO:0005515
Alju12g0814 685 Coils Coil 178 198 - -
Alju12g0814 685 FunFam RING-type E3 ubiquitin transferase 305 380 - -
Alju12g0814 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 379 IPR013083 -
Alju12g0814 685 FunFam RING-type E3 ubiquitin transferase 389 482 - -
Alju12g0814 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 569 611 IPR000225 GO:0005515
Alju12g0814 685 Pfam Armadillo/beta-catenin-like repeat 436 474 IPR000225 GO:0005515
Alju12g0814 685 Pfam Armadillo/beta-catenin-like repeat 518 556 IPR000225 GO:0005515
Alju12g0814 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 446 488 IPR000225 GO:0005515
Alju12g0814 685 FunFam RING-type E3 ubiquitin transferase 483 583 - -
Alju12g0814 685 CDD RING-Ubox_PUB 307 359 IPR045210 -
Alju12g0814 685 Pfam U-box domain 306 377 IPR003613 GO:0004842|GO:0016567
Alju12g0814 685 SUPERFAMILY ARM repeat 405 679 IPR016024 -
Alju12g0814 685 MobiDBLite consensus disorder prediction 1 21 - -
Alju12g0814 685 FunFam RING-type E3 ubiquitin transferase 585 684 - -
Alju12g0814 685 Gene3D - 384 600 IPR011989 -
Alju12g0814 685 SMART Ubox_2 309 372 IPR003613 GO:0004842|GO:0016567
Alju12g0814 685 ProSiteProfiles U-box domain profile. 305 379 IPR003613 GO:0004842|GO:0016567
Alju12g0814 685 MobiDBLite consensus disorder prediction 1 23 - -
Alju12g0814 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 487 529 IPR000225 GO:0005515
Alju12g0814 685 SUPERFAMILY RING/U-box 306 380 - -
Alju12g0814 685 Gene3D - 601 680 IPR011989 -
Alju12g0814 685 PANTHER U BOX DOMAIN-CONTAINING 70 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0814 Alju-ChrAlju12 24857898 24861074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0814 26 681 U-box Gene Family AT1G23030 61.702 0.0 731