Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0807 ATGAAGTTCAGCAAGAAATACGAAGAGTACGTGAGAGGCCAGAAGAAGAAACTCCCTGGAGTCGATATCAAGAAGCTCAAGAAGATAATGAAACGATGCAGCAGACACTATCAATATAGAAAAGGCCTCAACGAAGAAGAAGAAGCCCTTGACGCCCCAATTATGTGTTCCGATCAATGCCCAGTGTGCGATGGTAGCTTCTTCCCTTCCCTTCTCAACGGGACGACTGAAGTAGTAGGTTGCTTTAACGAACATGCCCAAAAATTGCTGGAACAACATCGTGCTTCAGGCTTCACAAAGTATTTTCTCTCGTTCAAAGGCAAATTACGTGGAGAACATATTGACCCCATTCAAGAAGGCATGGACCTGGTTTCTTATGCTCTAATTAATTCAGTGGCAGTTCGAAAGATACTCAAAAAATATGATAAGATTCATTATTCTAAGCAAGGGCAATTATTCAAGTCACGAGCCCAGAGTATGCACAAAGAAGTTCTTTGGAGTCCTTGGCTTTTAGAACTCATGGCCTTCCACATCAATTTAAGGGAAACCAATAACGATACAATCATGAAGAAGAAGGCACCTGCTTTCTTTGATGGATTCTCGCTCACATTTAATGATAATAAACCATCACTTACTTGTGAGTCTTTTGGTTCCATCAAACTTGATATCGACTTGACTTGTTCTATATGCTTGGACACAATATTTGATCCAGTCTGTCTTACCTGTGGCCATATATTCTGCTACATGTGTGCTTGCTCATCTGCTTCAGTAAATATTGTTGATGGGCTTAAGGCAGTAAATTCTAAAGCAAAATGTCCTCTATGCCGAGTGGACTCAGTCATTGTTGAGGAAGGAGTTTATGAAGGTGCTATACATTTGGAAGAATTAAATATCCTATTAAGCCAAAGTTGCCGAGAATATTGGGAACAAAGGCGTCAGATAGAGAGGACAGAGAGGCTTAAGCAAATAAAAAAGTACTGGGAATTGCAATGCAGCGCATTCATGGGTGTCTAA 1014 0.4063 MKFSKKYEEYVRGQKKKLPGVDIKKLKKIMKRCSRHYQYRKGLNEEEEALDAPIMCSDQCPVCDGSFFPSLLNGTTEVVGCFNEHAQKLLEQHRASGFTKYFLSFKGKLRGEHIDPIQEGMDLVSYALINSVAVRKILKKYDKIHYSKQGQLFKSRAQSMHKEVLWSPWLLELMAFHINLRETNNDTIMKKKAPAFFDGFSLTFNDNKPSLTCESFGSIKLDIDLTCSICLDTIFDPVCLTCGHIFCYMCACSSASVNIVDGLKAVNSKAKCPLCRVDSVIVEEGVYEGAIHLEELNILLSQSCREYWEQRRQIERTERLKQIKKYWELQCSAFMGV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0807 337 ProSiteProfiles SPX domain profile. 1 155 IPR004331 -
Alju12g0807 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 336 IPR033326 -
Alju12g0807 337 SMART ring_2 227 275 IPR001841 -
Alju12g0807 337 CDD RING-HC_BAH1-like 218 296 - -
Alju12g0807 337 SUPERFAMILY RING/U-box 217 281 - -
Alju12g0807 337 ProSitePatterns Zinc finger RING-type signature. 242 251 IPR017907 -
Alju12g0807 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 334 IPR013083 -
Alju12g0807 337 Pfam Zinc finger, C3HC4 type (RING finger) 224 277 - -
Alju12g0807 337 ProSiteProfiles Zinc finger RING-type profile. 227 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0807 Alju-ChrAlju12 24254781 24261805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0807 224 278 C3H Transcription Factor Family AT4G28270 40.000 9.03e-08 50.1