Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0755 ATGTCTTGTTCTTCGTCATCATCAAGATCGCTTGTGTCTATGGGCTCATCAGAAAGCTCAACCACAGTACTCCAACAGCGTCTTCAGTTCGTTTTGCACAGCCGAACTGAGTGGTGGGTTTATGTCATTTTCTGGCAAGCTTGGAAAGAAGATAGCAGTGGTAGTACAAGGAGCCAAGTGTTGTTAAATTGGGGTGATGGCCACTTCCGTGGAACCAGAGAGTCCAAGTCCAAGGAAACCGCCACGAGTGATGATCAATGGCGAAGCCCTGACGGCGGTCGAAAGATGAAGTTGATTATTCCAAACCACAGGGAAGGCGGCAGCGACGGACATGTGACTGAGTTGGAATGGTTTTATACAGTATCGTTGACTCGTTCGTTTGCCGCCGGCGATGATGTGGTGGGTCGTGCCTTCAGCTCAGCCACACATGTTTGGCTTGCCGGAGCCACCACCGGCCTCAGTGGCAGGGAGCTGCAGTTCCACGAGTGTGAGAGAGTTCGAGAAGCGTTTGCACATGGAATCCAAACTCTGGTGTGCATTCCCATTCCTAATGCACTTGGAGTTCTTGAGATAGCCTCTAATGACTTAATAACCCAAGATTGGAGCCTGATTCAATCTGTTAAATCAGTTTTCGAGTTCGACAACTTCTTCATCCCCAGTCCACCAGGTCTGGTTTCTGAGCCTTACCATCATTTCAAGAACGAAGCTGTCAATGACTCTGAAGAAGCTCTTTTTGTATCTTCCTCCAAGCGTCGATCCATCAGAAAAAAGGGAAGAAATGAGGCTGATAAAGCACAAGAGCTAATAATGCCTCTAAACCACGTGGAGGCCGAGAGGCAGAGAAGAGAGAGACTGAATCAAAGATTCTATGCTCTCCGTTCCGCCGTTCCTAATGTTTCCAAAATGGACAAAGCTTCTCTTCTCTCTGACGCAGTCACCTACATCAATGAACTCAAGGCGAAAATTGAGGAACTAGAGACTAGATTCAAGAAAACTGAGAAGGAAGAAGCTCCGGCGACAATGCATTATAGTCACTCGAGTTCTGAAGCGAGTGCGATTGGTGTCGAGGTCAACATTGTGGGGACGGAGGCGATGATAAGGGTTCAGTGCCCGGATGTGAATCACCCAGCTGCAAGTTTAATGGATGCTCTAAGACAACTCGATTTTCATGTTCATCATGCCAGCATATCAAGAGTCAAAGACCTAATGTTGCAAGACGTTGTCGTTCGGGTTCCCAATAATTTCATGACTGCCCAGGCCATGAAAAATGCCATTCTACAACGTTTATAG 1290 0.4736 MSCSSSSSRSLVSMGSSESSTTVLQQRLQFVLHSRTEWWVYVIFWQAWKEDSSGSTRSQVLLNWGDGHFRGTRESKSKETATSDDQWRSPDGGRKMKLIIPNHREGGSDGHVTELEWFYTVSLTRSFAAGDDVVGRAFSSATHVWLAGATTGLSGRELQFHECERVREAFAHGIQTLVCIPIPNALGVLEIASNDLITQDWSLIQSVKSVFEFDNFFIPSPPGLVSEPYHHFKNEAVNDSEEALFVSSSKRRSIRKKGRNEADKAQELIMPLNHVEAERQRRERLNQRFYALRSAVPNVSKMDKASLLSDAVTYINELKAKIEELETRFKKTEKEEAPATMHYSHSSSEASAIGVEVNIVGTEAMIRVQCPDVNHPAASLMDALRQLDFHVHHASISRVKDLMLQDVVVRVPNNFMTAQAMKNAILQRL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0755 429 MobiDBLite consensus disorder prediction 72 95 - -
Alju12g0755 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Alju12g0755 429 PANTHER MYC 14 428 IPR045084 GO:0003700|GO:0006355
Alju12g0755 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 345 IPR036638 GO:0046983
Alju12g0755 429 Gene3D - 263 336 IPR036638 GO:0046983
Alju12g0755 429 Pfam Helix-loop-helix DNA-binding domain 273 318 IPR011598 GO:0046983
Alju12g0755 429 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 24 211 IPR025610 -
Alju12g0755 429 Coils Coil 308 335 - -
Alju12g0755 429 SMART finulus 275 324 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0755 Alju-ChrAlju12 19736479 19737768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0755 16 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 38.215 2.67e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju12g0755 bHLH-MYC_N 9.5e-42 CL0161