Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0730 ATGACGACTCGAATAGCGCCTGGTGTGGGAGCAAACTTGCTGGGTCAACATTCCGCTGAGAGGAATCAAGATGCTACTGCTTACGTTGGCAATCTCGATCCCCAGGTATCTGAGGAGTTATTATGGGAGCTATTTGTTCAGGCAGGTCCAGTTGTCAATGTCTATGTTCCCAAAGACAGAGTGACTAACCAACATCAAGGTTATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTTCTTAATATGATTAAGCTGTATGGAAAACCAATACGTGTAAATAAGGCTTCCCAAGACAAAAAGAGCTTGGATGTGGGAGCAAACCTTTTCATAGGAAACCTCGATCCTGATGTGGATGAGAAACTCTTGTATGATACATTCAGTGCCTTTGGAGTAATTGTTACAAATCCCAAGATCATGAGAGATCCCGAAACAGGAAATTCCCGTGGATTTGGTTTCATTAGCTACGATTCATTTGAGGCATCTGATTCCGCTATTGAGGCAATGAATGGGCAATATCTTTGCAATCGTCAAATAACAGTGTCTTATGCATACAAGAAAGATACAAAAGGGGAAAGGCACGGTACACCAGCAGAAAGAGTTCTGGCTGCCAGCAACCCAGGTACCCAGAAGAGCAGGCCCCACACTTTGTTTGCCAGTGGACCTCCGACACTTCCCAATGCTCTTCAGGCTAATGGTGTCATTGCCGCCGCTCCAGTGCCGCCTCGTCCCTATGCTAATGGAGTTGCTCCCCCGGCTATTCCCCCCCTTCGACCACCACCACCTCAAGCTGCACCATTTCCACCTATGCCAGTAGCCCCTCAACCAGCATGGCATCAGCAGCAACCAGGTCAAACAATGCCACCACCCGTGATGCCTCCGCCTCCTGTCCAGCAGTTCAGGCCACCTCACTCGAGTATGCCACCCCCTCCACCTCCACAAGCGATGCCAGCTCCCCCTAGGCCTCTTCCACCACCAGCTGCAATGACAGGCCAACAACCTGTTTGGCGGCCACCGCCACCCCCTCCACCCCAGCAACAGGGTGTGCGACCTCCTTCATTTCCTCAATCCTCCATGCCACCACCGCCTCCTCCAAGTTGA 1116 0.5063 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPGTQKSRPHTLFASGPPTLPNALQANGVIAAAPVPPRPYANGVAPPAIPPLRPPPPQAAPFPPMPVAPQPAWHQQQPGQTMPPPVMPPPPVQQFRPPHSSMPPPPPPQAMPAPPRPLPPPAAMTGQQPVWRPPPPPPPQQQGVRPPSFPQSSMPPPPPPS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0730 371 CDD RRM1_SF3B4 28 100 IPR034158 -
Alju12g0730 371 PRINTS Proline rich extensin signature 288 304 - -
Alju12g0730 371 PRINTS Proline rich extensin signature 267 288 - -
Alju12g0730 371 PRINTS Proline rich extensin signature 318 343 - -
Alju12g0730 371 PRINTS Proline rich extensin signature 212 228 - -
Alju12g0730 371 PRINTS Proline rich extensin signature 254 266 - -
Alju12g0730 371 Gene3D - 16 106 IPR012677 -
Alju12g0730 371 MobiDBLite consensus disorder prediction 256 281 - -
Alju12g0730 371 CDD RRM2_SF3B4 111 193 IPR034159 -
Alju12g0730 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Alju12g0730 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Alju12g0730 371 Gene3D - 107 204 IPR012677 -
Alju12g0730 371 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Alju12g0730 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Alju12g0730 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Alju12g0730 371 FunFam Splicing factor 3b subunit 4 16 108 - -
Alju12g0730 371 MobiDBLite consensus disorder prediction 256 371 - -
Alju12g0730 371 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 365 - -
Alju12g0730 371 SMART rrm1_1 26 99 IPR000504 GO:0003723
Alju12g0730 371 SMART rrm1_1 113 187 IPR000504 GO:0003723
Alju12g0730 371 MobiDBLite consensus disorder prediction 291 371 - -
Alju12g0730 371 FunFam splicing factor 3B subunit 4 109 200 - -
Alju12g0730 371 MobiDBLite consensus disorder prediction 193 225 - -
Alju12g0730 371 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0730 Alju-ChrAlju12 17588268 17599916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0730 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 29.293 9.64e-19 85.9