Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0720 ATGGGATTTACGGTGGGCTGCACCGAGATCGTCTTCCCAGAGTTCATCCTCCAGATCCTTGCCGTACTTGGAATCCTCAGGGGAATCAAATCGTTCCTCCTCCGCTCCTTCGGCGTCCCCGATTTTCTCGAACAGGACATTCAGTACTTTTGGGATTCCGACGACCCGTACTATCATTATTATCCGACCCGGATGCCCGAATTCGAGTCGGCGAGCGCGGTGCTGATCCGAGAGATGCTGCCGGTGATGAAGTCCTCTGAGATGGCGGCGGAAGAGGTGGTGGCGCCGGAGAGCTCTTGCGCCGTGTGCCTGAACGAATTTGATGTTGACGTTGCGATCCGACAGCTCGCAAACTGCCGCCACGTCTTCCACAAGGAGTGTCTTGACCGTTGGTTGGGATACGATCAGAAGACTTGTCCTTTGTGTCGATTACAGTTCATACCTCACCATTTGCAAGAAGCTTTTAACGAGTCTCTGTGGGCTGCTTCTAGTATACCTGAATTTTACCCAGAATCTGATTCAGAATTATTATCATGA 537 0.5177 MGFTVGCTEIVFPEFILQILAVLGILRGIKSFLLRSFGVPDFLEQDIQYFWDSDDPYYHYYPTRMPEFESASAVLIREMLPVMKSSEMAAEEVVAPESSCAVCLNEFDVDVAIRQLANCRHVFHKECLDRWLGYDQKTCPLCRLQFIPHHLQEAFNESLWAASSIPEFYPESDSELLS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0720 178 SMART ringv_2 99 143 IPR011016 GO:0008270
Alju12g0720 178 ProSiteProfiles Zinc finger RING-type profile. 100 143 IPR001841 -
Alju12g0720 178 PANTHER RING ZINC FINGER PROTEIN-RELATED 72 164 - -
Alju12g0720 178 CDD RING-H2_RHA1-like 97 146 - -
Alju12g0720 178 SMART ring_2 100 142 IPR001841 -
Alju12g0720 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 148 IPR013083 -
Alju12g0720 178 Pfam Ring finger domain 99 143 IPR001841 -
Alju12g0720 178 SUPERFAMILY RING/U-box 78 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0720 Alju-ChrAlju12 16773922 16774458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0720 1 164 C3H Transcription Factor Family AT1G63840 44.643 8.11e-44 141