Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0715 ATGGGACTCTCCTTTCTCCTCCACCAACCACCACCACCACAACAACCACGCTCTTCCTTTTCCGACAAATCGAGGGAGATGGTATCATCGTCAGCTGGATTCTGCTACTCCGAGGTATCAACAGGCAACCCGCCGGCGATCCAAACCCATATGGAGAATCACCATCATCATCACAATCAGATCCAAGGATTTGAATCCGACCCGGCGGACATGTTCAACCTCACAGCCAGCATGGACATGATTGGCTTCCCCAACAAGAATATTCACCACCACCAAAGCACTGAAAGTAGCAACCTCGTTTGGAAAAGCTTCCTGGGTAAACCCACCACCCATCACCACCACCACCACAATCCGGCGGGTCCTTCTTATTCTTCCTCCAAGACGGCCACCACCATGAATAATAATGAGTCTGGTTCCACCAATTTCTATAATCACTACACTAAACCAGATTTCACTTCCAGCGAAAGTCTGCTTGTGGGAGAAGCTCATCATCATGATTCTTCGTCTGCCTCTTGGCAAGATAACAGGTTACTTGTGGATGATTCTTCTTTAAGGTGTGTGTTCCCTTGTGAAGGAAACGAAAGGCCAAGTCAAGGCCTCTCTCTCTCACTGAGTTCCAATAATCCCTTAAGCATTGGATTACAATCTTTTGAACTAAGACAGACCAACAACCAACAACCAGACTTTGTTTCTTCTGGAGACAAGATATTGCTGGGAAAATCGATGAATCCTCAACAACAACAAGAAGCTGGGAATAATCTGTATCAAGGCCATTTTTTGCTTAAGAACTCTAAGTATTTGGTCCCTGCACAGGAACTTCTCAACGAGTTTTGCAGCCTGGGAACGAAGCAAAGTGACTTAGTGAAGCAAAAGTCGTCATCAAGTCAGAAAAACAAACAGTGGGAAGATGATAATAACGGAATCGGTCCCTCCAAGAAGCATCCCGTTGGCTCTCTAGAATTCATCGAATTACAGAAGAGAAAGACCAAACTACTCTCCATGCTTGAAGAGGTTGAGAGGAGATACAGGCACTACTTGAACCAAATGAAGGCAGTGGTGTCTTCGTTCGAGGCGGTGGCCGGTGCTGGAGCGGCGAGGGTTTACTCGGCGTTGGCATTGAAGGCGATGTCGAGGCATTTCAGGTGTTTGAAAGATGGGATATTGGGTCAGATAGAAGTAGCAAGGAGAGGGATGGGAGAGAAAGATCCAGTTGCACCAGGAACCACAAGAGGCGAAACACCAAGACTCAGAATCATTGACCAAACTCTCAGACAACAGAGAGCTTTCCAACAAATGAACATGATGGAGAGCCATCCATGGCGGCCCCAACGAGGCCTCCCCGAACGATCCGTCTCAGTTCTTCGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTACCCAAGTGATATGGACAAACATATCTTAGCTCGCCAAACTGGTCTCTCAAGAAGCCAGGTGTCAAACTGGTTTATTAATGCAAGAGTGAGGCTGTGGAAGCCAATGGTGGAAGAGATGTACTTGGAGGAAATAAAGGAGCATGAAAACAACATGGCTTCTTCTGAGGGGATCACCGATCCCGCCACTGTCGACGACGACGGCAACATCTTGGCCGGTGCTGGCAACCCGCCACCGCCTGTGAGCACACGTCTGGTGGATCAGAAGCCGCTCCAGAACCACCGGTTGCTTCGAATAGATTCCGAGTGTGTGTCTTCTATCATAAACAACCAGCCAGATCACCACAAAAACGAATCCATTAAGAACAATAATAATCCCCATCAAGATCATCAACAGTGTGGTGGGACATTTGGATCTGTGGAGCTTGATTTTTCATCTTACAACACTCATCACAACTCAGCTGCCGGGGGCATGGTTTCTTACAGTAATGAGAATGGGAGTAATAGTAATCATCATCAGAATTATAACAATGGAGGTGTTTCTTTGACGCTAGGGTTACAGCAACACGGCGGAAGTGGGGTGAGTCTGGCATTTCCTCCGCCGTCTCAGGCGTCACTGTTTTATCCAAGAGATCAAATGGAAGATTGCCAACCTGTTCAGTACTCGCTTTTGGACGGTGAAGCACAAAATCTTCCTTACAGAAATTTAATGGGCGCACAATTGCTCCATGACTTGGCAGGATAA 2139 0.4727 MGLSFLLHQPPPPQQPRSSFSDKSREMVSSSAGFCYSEVSTGNPPAIQTHMENHHHHHNQIQGFESDPADMFNLTASMDMIGFPNKNIHHHQSTESSNLVWKSFLGKPTTHHHHHHNPAGPSYSSSKTATTMNNNESGSTNFYNHYTKPDFTSSESLLVGEAHHHDSSSASWQDNRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSNNPLSIGLQSFELRQTNNQQPDFVSSGDKILLGKSMNPQQQQEAGNNLYQGHFLLKNSKYLVPAQELLNEFCSLGTKQSDLVKQKSSSSQKNKQWEDDNNGIGPSKKHPVGSLEFIELQKRKTKLLSMLEEVERRYRHYLNQMKAVVSSFEAVAGAGAARVYSALALKAMSRHFRCLKDGILGQIEVARRGMGEKDPVAPGTTRGETPRLRIIDQTLRQQRAFQQMNMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDMDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEIKEHENNMASSEGITDPATVDDDGNILAGAGNPPPPVSTRLVDQKPLQNHRLLRIDSECVSSIINNQPDHHKNESIKNNNNPHQDHQQCGGTFGSVELDFSSYNTHHNSAAGGMVSYSNENGSNSNHHQNYNNGGVSLTLGLQQHGGSGVSLAFPPPSQASLFYPRDQMEDCQPVQYSLLDGEAQNLPYRNLMGAQLLHDLAG 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0715 712 FunFam BEL1-like homeodomain protein 4 443 505 - -
Alju12g0715 712 MobiDBLite consensus disorder prediction 119 141 - -
Alju12g0715 712 Coils Coil 321 348 - -
Alju12g0715 712 Pfam Homeobox KN domain 457 496 IPR008422 GO:0003677|GO:0006355
Alju12g0715 712 ProSiteProfiles 'Homeobox' domain profile. 437 500 IPR001356 GO:0003677
Alju12g0715 712 MobiDBLite consensus disorder prediction 107 141 - -
Alju12g0715 712 Gene3D - 443 505 - -
Alju12g0715 712 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 127 519 - -
Alju12g0715 712 MobiDBLite consensus disorder prediction 1 24 - -
Alju12g0715 712 SUPERFAMILY Homeodomain-like 441 506 IPR009057 -
Alju12g0715 712 MobiDBLite consensus disorder prediction 288 314 - -
Alju12g0715 712 Pfam Associated with HOX 261 387 IPR006563 -
Alju12g0715 712 SMART HOX_1 440 504 IPR001356 GO:0003677
Alju12g0715 712 CDD homeodomain 440 501 IPR001356 GO:0003677
Alju12g0715 712 SMART prehox3 255 389 IPR006563 -
Alju12g0715 712 MobiDBLite consensus disorder prediction 288 305 - -
Alju12g0715 712 MobiDBLite consensus disorder prediction 575 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0715 Alju-ChrAlju12 16356734 16359913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0715 108 711 Homeobox Transcription Factor Family AT5G41410 44.104 2.08e-140 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Alju12g0715 POX 4.6e-47 No_clan