Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0687 ATGGTGCCAGAAAACATGAAGAAACAACTTGCTTTGGCTGTGAGGAGCATCCAGTGGAGCTATGCCATATTCTGGTCTGCTTCTAGTAGCCAACCCAGGGTTTTGAAATGGAGTGAGGGATATTACAATGGCGACATAAAGACTAGGAAAACAAGTCAGGCAGCACAACGTAGTTCTGACCAAATAGGTTTGCAGAGGAGTGAGATGTTGAGAGAGCTATTTGACTCCCTCGCAACTGCAGAATCCGCCGCCGCACAAATTAAAAGGCCTTCATCAAATGCGCTAAGCCCTGAAGACCTCTCTGGTGCTGAGTGGTATTACTTGGTTTGCATGTCCTTTGTATTCAATATTGGCCAAGGATTACCTGGACGAACTCTGGCAAATGGCCAACCTATTTGGGTTTTCGATGCCCCTCATGCTGATACTAGAGCTTTTAGTCGCTGTCTGCTCGCAAAGAGTGCATTCATTCAGACTGTGGTATGCTTCCCTTTTCTGGAAGGTGTTGTTGAGCTGGGGACGAGTGATCTGATCTCAGAAGACCTCAGTCTCATTCAACGTATAAAAACTTCCTTCCTGGATATTCTGAATTCCAATGTGTCTATAGCATTTGACCACAGTGCTTATGATGACAAATTACCAGAAGTGGGATATACTGTAAACAACAAAACTTTTGCCTATAGTTCAATTGCAATTGAAGCAAACTGGCCAGCAGATGAGACACATATGGTTGAAAGAATAGACGGTGGTGCTTCTCAGGTCCAAAGCTGGCAAGTTATGGATGATGAATTGAGTAATGATGCCCATAACTCAATGACAACTAGTGACTGTAGTTCTCAAACTCTTTCTGATCCTGAAAAGACTGCCTCTGTTCCCAAGGATCAAAACCCAACGGACTATTCTGTGCAAGAACTCCAAGAGTGGCATTATCGAAAAGTCCTTTCTGCAGTTCTAAAAGATTCAGACCCATTAGCTATTACAGAGCATTTTCAAAGTAGTGATAAGGAATCCAGCTTTGTTAGTTGTAAGAAAAGAGGATCGATGAGTTGTCAAACTCTAACAGGAGGAGGAACCCCACAGAAGTTGTTGAAGAAGGTATTGTTTGAAGTTCCTCGGATGCATATGGACGTGCTTCTTGAAATCCAAGAAGAAAATGATTACAAAGAGAGAATAAGACCAGAGGTTGATGAAATTGGCATGAACCATGTGTTGTCAGAAAGAAGGAGAAGGGCGAAACTAAATGAAAGGATATTAACCCTTAGATCAATGGTCCCTTCAGTTACTAAGGATGACAAAGTTTCAATACTAGACGATGCAATCGAATACCTTAGGAAGCTCGAGAAGAAGGTTAGAGAAGTGGAAGCATGTAAGGAGCTAATAGATTTAGAAACCAAAGCTGAAAGAACACCTCAAGATATGGTAGAGAGGACTTCTGATAATTATTTTAACAAAACTGATAATGGCATGAAGTCAATGAATAACAAGAGAAAGGCATGTGAGATTGAAGAAGAGACATGGCTAGAGAATGATTCATTTGCTCTAAATGACAGTTCTACAAGTAGCGTGGCTATCAGTTTGAGCAACACTGATGTTCTGATTGAAGTGAAATGTCCGTGGAGGGAAGGCAGAGTGATGAAAATTATGGAAGCACTTAAGAGTTTCCACATGGATTTACGATCAATTCAGTCATCAGAAGCTGATGGGATTCTTCATCTAACCATTAGATCCCAGTTGAGAGGACCAACCATCACCTCAGTGAAAAAGATAAAACAAGCGCTGCAAAAAGTAATTTGGAACTGTTGA 1800 0.4144 MVPENMKKQLALAVRSIQWSYAIFWSASSSQPRVLKWSEGYYNGDIKTRKTSQAAQRSSDQIGLQRSEMLRELFDSLATAESAAAQIKRPSSNALSPEDLSGAEWYYLVCMSFVFNIGQGLPGRTLANGQPIWVFDAPHADTRAFSRCLLAKSAFIQTVVCFPFLEGVVELGTSDLISEDLSLIQRIKTSFLDILNSNVSIAFDHSAYDDKLPEVGYTVNNKTFAYSSIAIEANWPADETHMVERIDGGASQVQSWQVMDDELSNDAHNSMTTSDCSSQTLSDPEKTASVPKDQNPTDYSVQELQEWHYRKVLSAVLKDSDPLAITEHFQSSDKESSFVSCKKRGSMSCQTLTGGGTPQKLLKKVLFEVPRMHMDVLLEIQEENDYKERIRPEVDEIGMNHVLSERRRRAKLNERILTLRSMVPSVTKDDKVSILDDAIEYLRKLEKKVREVEACKELIDLETKAERTPQDMVERTSDNYFNKTDNGMKSMNNKRKACEIEEETWLENDSFALNDSSTSSVAISLSNTDVLIEVKCPWREGRVMKIMEALKSFHMDLRSIQSSEADGILHLTIRSQLRGPTITSVKKIKQALQKVIWNC 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0687 599 Coils Coil 435 455 - -
Alju12g0687 599 Pfam Helix-loop-helix DNA-binding domain 400 446 IPR011598 GO:0046983
Alju12g0687 599 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 396 445 IPR011598 GO:0046983
Alju12g0687 599 MobiDBLite consensus disorder prediction 265 298 - -
Alju12g0687 599 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 191 IPR025610 -
Alju12g0687 599 Gene3D - 65 173 IPR029016 -
Alju12g0687 599 SMART finulus 402 451 IPR011598 GO:0046983
Alju12g0687 599 PANTHER TRANSCRIPTION FACTOR TT8 2 597 - -
Alju12g0687 599 Gene3D - 396 457 IPR036638 GO:0046983
Alju12g0687 599 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 459 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0687 Alju-ChrAlju12 13684253 13687917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0687 2 599 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 44.290 2.11e-168 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju12g0687 bHLH-MYC_N 2.6e-48 CL0161