Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0684 ATGCTCAGGTTTATAATGGGTTGTAATATTTCCAAGCTCTCAGCATGCTGCTCTGGCATAGAGCAAAGAGGTCCATTATTGCCTGAGGACCACATTGACAAAAATGAAAAGAAAAGTGAGACCACTCATGTGCCACTATTTCAAGAGTTCACAATTCATCAGCTCATCAAGGCTACTTCTGGATTTGCTGTTGAAAATATAGTTTCTGAACAAGGGGAAAATGCTCCAAATTTGGTTTATAAAGGGAAAATGGAAAATCAAACACTGATGGCTGTCAAACGGTTCAATAAGCAGGCTTGGCCTGATGCCCGACAATTTACAGCAGAAGCCAGGAAAATTAGTCATCTAAGGAATGAAAGATTGGTAAGTCTACTTGGATGCTGCAGTGATGGTGACGAGAGGTTACTTGTTGCTGAATATATGCCCAATGATACTTTAGCAACACACTTGTTCCATTGGGAAACAATGGCCATGAAATGGCAAATGCGACTAAGAGTTGCTTTATACATCGCCCAAGCGCTAGAATATTGTGCAAGCAAAGGACGTGCGCTGTATTATGATCTAAATGCTTATAGAGTACTTTTTGACAATGAAGGAAATCCTAGACTCTCATGCTTTGGTTTGATGAAGAACAGTCAAGATGGTAAAAGTTATAGTTCAAATCTGGCATTTGCTCCACCCGAATATCTGAAGTTAGGTAAAATTACTCCTGCAAGTGTAACATATAGTTTCGGAACCATACTGCTGGACCTTCTCACTGGAAAACACATTCCTCCAGGCCTTGCACTTGACCTGATTCGGGAAAGGAACCTTCGGACGTTAACGGATTCTTGTTTAGAAGGAAAATTTTCCAATGATGAAAGGGCTGACTTTGTGCACTTAACCTCGCGGTGTTTACAATTACAACCACAGGAGCGTCCTCGTCCAAATTATTTGGTTACTGCCTTGATACCTCTACAGACGGAGTCTGAGATTCCTTCTCATGTTTTGATGGGTATACCATATGTTGCTTCATCCGTTTCACCACTTGGTGAAGCTTGTCAGAGAATGGATTTGACTGCTATCCATGCACTCCTTGAAAAGCTTGGGTATAAAGATGATGGGGGTACTTCTGAGATGGATGAAGCATTGTACTCAAAGAAGAAGGGCGATGCTGCTTTTTGTTATAAAGACTTTACCACCGCGATTGATAGTTATACGAAGTTCATAGGTGTCGGAACCATGGTTTCTCCAACAGTTTATGCACGTCGCAGCCTCTGTTATCTGAAGATCAAAAAGCCAGAACAAGCACTGATGGATGCATTACAAACACTAACAATTTCTCCTAACTACTACATTGCGTTCTACTTACAAGCTGTGGCACTTCTTGCATTGGGCAAAGAGAATGAAGCTCAGGTTGCTCTTAAACAGGGTTCTTCACTTGAAAGCAAAAAAAAGTACATAAATTAG 1449 0.4106 MLRFIMGCNISKLSACCSGIEQRGPLLPEDHIDKNEKKSETTHVPLFQEFTIHQLIKATSGFAVENIVSEQGENAPNLVYKGKMENQTLMAVKRFNKQAWPDARQFTAEARKISHLRNERLVSLLGCCSDGDERLLVAEYMPNDTLATHLFHWETMAMKWQMRLRVALYIAQALEYCASKGRALYYDLNAYRVLFDNEGNPRLSCFGLMKNSQDGKSYSSNLAFAPPEYLKLGKITPASVTYSFGTILLDLLTGKHIPPGLALDLIRERNLRTLTDSCLEGKFSNDERADFVHLTSRCLQLQPQERPRPNYLVTALIPLQTESEIPSHVLMGIPYVASSVSPLGEACQRMDLTAIHALLEKLGYKDDGGTSEMDEALYSKKKGDAAFCYKDFTTAIDSYTKFIGVGTMVSPTVYARRSLCYLKIKKPEQALMDALQTLTISPNYYIAFYLQAVALLALGKENEAQVALKQGSSLESKKKYIN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0684 482 FunFam probable serine/threonine-protein kinase At5g41260 142 333 - -
Alju12g0684 482 SUPERFAMILY TPR-like 375 477 IPR011990 GO:0005515
Alju12g0684 482 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 34 478 IPR045845 GO:0004672|GO:0009742
Alju12g0684 482 SUPERFAMILY Protein kinase-like (PK-like) 36 325 IPR011009 -
Alju12g0684 482 SMART tpr_5 411 444 IPR019734 GO:0005515
Alju12g0684 482 SMART tpr_5 445 478 IPR019734 GO:0005515
Alju12g0684 482 Gene3D Tetratricopeptide repeat domain 364 481 IPR011990 GO:0005515
Alju12g0684 482 FunFam probable serine/threonine-protein kinase At4g35230 37 140 - -
Alju12g0684 482 Pfam Protein tyrosine and serine/threonine kinase 79 315 IPR001245 GO:0004672|GO:0006468
Alju12g0684 482 Gene3D Phosphorylase Kinase; domain 1 34 140 - -
Alju12g0684 482 Gene3D Transferase(Phosphotransferase) domain 1 142 333 - -
Alju12g0684 482 ProSiteProfiles Protein kinase domain profile. 65 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0684 Alju-ChrAlju12 13420318 13432048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0684 35 316 Glycoside Hydrolase AT3G07070 34.516 2.90e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Alju12g0684 PK_Tyr_Ser-Thr 1.8e-25 CL0016