Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0679 ATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGCAGGGCAGAGTCTTTGTGTTTCACCGTCCGGGTCACTGAATATACCGTCAGGGCCTTTATATTTTCCCACCGAAGATGAGTTCAAAGACCCCTTGGAATATATTTATAAGATTAGACCTGAAGCTGAGCCATATGGAATTTGTAAGATTGTACCACCAAAGAGTTGGAAGCCCCCATTTGCTTTGGATCTAGATTCTTTTACTTTCCCCACTAAAACACAGGAAATTCATAAGTTACAGGCTCGTCCTGCTGCATGTGACTCCAAGACTTTTGAGTTGGAGTACTCTAGGTTTTTAGAGGATCACTGTGGTAAAAAGTCAAGGAAGAAAATTGTATTTGAAGGGGAAGAACTGGACTTGTGCACACTGTTTAATGCTGTTAAGAGATTTGGTGGTTATGATAAGGTTGTGAAGAAAAAGAAATGGGGGGATGTTTCCCGGTTTGTAAGGCCAGGAAGAAAAATTACAGACTGTGCAAAGCATGTCCTATCACAGTTGTATTGTGACCATTTGTATGATTATGAGGATTACTATAATCAGCTGAATCAAGAGACAGGTAAGAAAGGCATACTTGAGGATGAAAAAAGTGATCATGGAGTTCGATCTTCAGGATCCAAGAGGATGAGAAGAAGTTTTGATTGTTTGAAAGTGAAGGATTGTAAAGTGGAGAAGGAAGAACATGACCAGATTTGTGAGCAATGCAGAAGTGGTTTGCATGGAGACGTGATGCTTTTATGTGATAGGTGTGATAAGGGCTGGCATATATATTGTCTCTCTCCACCCTTGAAGCAAATTCCTCCAGGAAACTGGTATTGCTTTAATTGCTTGAATTCTGACAGGGACAGCTTCGGTTTTGTGCCTGGTAAGCAGTACACCTTGGAAACCTTTAGACGTGTGGCTGATCGGTCAAGGAAGAGATGGTTTGGGCCAGGACCTGTTTCAAGGGTGCAAATAGAGAAGAAATTTTGGGAGATTGTAGAGGGATCGGTTGGTGAGGTTGAGGTTGTGTATGGAAGTGATTTAGATACATCTGTCTTTGGAAGTGGTTTTCCACGCTCAACTGATCAGAAACCAGAATCAATTGATTCAAAATTATGGGACGAATACTCATCTAATCCGTGGAATCTTAACAATTTGCCTAAATTGAAAGGGTCAATGCTTCAAGCTGTTCATCATAATATCACGGGGGTGATGGTACCCTGGCTGTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCATTGCTTTTACTCAATAAATTATCTACACTGGGGAGAGCCAAAATGCTGGTACAGTGTTCCTGGCAATGAGGCCAGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCTCAACCAGATCTGCTTTTCCAGCTTGTAACTATGTTAAACCCATCTGTTTTGCAAGAACATGGAGTTCCAGTTTACAGCATAATTCAGGAGCCTGGGAATTTTGTTATTACCTTTCCCAGATCATACCATGGAGGTTTTAATCTCGGTTTGAATTGTGCAGAGGCAGTTAATTTTGCCCCTGCTGACTGGCTACCTTATGGTGCATTTGGAGCTGATCTCTACCAGCGATATCACAAAGCTGCTGTCTTGTCTCATGAGGAGCTTCTGTGTGTAGTAGCTCAGTACAGTGACATTGATACCAAAGCATCTCCTTATTTGAAGAAGGAATTGCTTCGAATATATGATAAAGAGAAATCTTGGAGAGAAAAACTCTGGAAAAATGGTATTGTCAAATCATCTCGAATGGCTCCTCGGCAATGTCCTCAATATGTGGGAACTGAAGAGGATCCATCATGCATTATTTGCCAGCAGTATCTATATCTTTCTGCTGTTGTGTGCAGTTGCAGGCCATCTTCTCTTGTATGCCTGGAGCACTGGAAACATCTTTGTGAGTGTAAAACTGTAAAACTACGTCTTCTCTATCGTCACTCAGTTGCAGAATTGTATGACTTGGCATTTTCTATGGACAATTATACTTCTGAGGAGAAAGCACTGGGTAGGAATATAAGAAAGAATTTTTCATGTCTGGGTACTTTGACAAAGAAGGTAAAAGGTGGTTCCATTACTTTCTCTCAGCTTGTTGTACAATGGCTTCTGCGATCTAGTGAGATTCTTCAGAATCCTTATTCAAATGATGCTTTTGTTTCTGCACTAAGGGAAGCTGAACAGTTTCTTTGGGCTGGTCCTGAGATGAATTCTGTTCGAGATATGGTGAAGAATTTGATTGAAGCTCAGAAGTGGGCAGAAGGTATAAGAGATTGCTTAAGAAAAATTGAAGCCTGGTTGTGTGATCAGGACTCTAACATGGAGAAAGTTCACTTAGAATTTGTTGATGAGCTGCTAACATTTAATTCTGCACCATCATGCAACGAACCTGCTTATCATAAGTTGAAGGAATATAAAGAAGGGGCCGTATTGTTAAGTCAGGAGATTAATATTGCTTTGTCAAAGTGTTCAAAGATGTCAGAGTTGGAATCTCTACATTCTAGAGCTTGTGGCTCTCCAATCTACGTGAAAGATGTGAAGAATTTGGAAAGGAAAATTTCTTCTACTAAGGCATGGCTGCATAGAGCTAGAAGCTGCATCTCAATAAAACATCCTGCTGTAGTAGAGCTTGATGCTCTGTTCAAGTTGAAGTCAGAGATTATGGAGCTTCAAGTACAACTTCCAGAGATAGAAGTAATTCAGAATATATTAATTCAAGTGGAATCTTGTAGTTCAAAATGTAGTGAGACATTACAAGGTCCCATGACTCTAAAGAATGTCGATTTGCTGCTTAAGGAATGGGACAGCTTTGTGGTTGATATACCAGAGGTGAAACTCCTGAGGCAATATTATAAGGATGCTGTTTCATGGGTTGCCAACTTTAACCGTGCATTAGGGACAACACATGAACGGGAGGATCAACATCATGTTACTGATGAATTGAAGGGTATTTTAGAAGATGGTTTATCTTTAAAAATCCAAGTTGATGAGTTGCCATTAGTTGAGACTGAGCTGCAGAAGGCTCTTTGCCGGGAAAAGGCTCAAAAGGCGCATAAATCTAAAATGTCTCTGGAATCTGTTCAAGAAGTGATGAAGGAGGCCACACTGCTGCAAATTGAGGGAGAGAAATTATTTGTTGGTTTATCTGGTGTACTTGCTGTTGCCACACCTTGGGAGGAAAGGGCTAAAGAGATTCTTTTGCATAAGGCTTCCTTCTCTGACTTTGAGGACATGATCAGGACCTCAGAATCCATTTTTATTATTCTTCCTTCCCTTAATGATGTGAAGGAAGCACTATTGGAAGCTAATTCTTGGTTGATGAATTCAAAACCATTCTTGGTTTCCTCTAGTTGTCCGTCAGATTCTCTACGTAAAGTTGAGGACCTTCAGATGTTGGTTTCTCAGTCGAAGCTTATTAAAATAACGTTTGAAGAAATAAAGATGCTTGAAATAGTTATGCATAACTGCGAAGAATGGGAGGCTGAGGCATGTTCTGTATTGGAAGATGCCCAGCATATTTTTGAATTGGATGACATTGTTCATGGAATAAGCAATGGCCTAATGGCCAAAGTTGAAGGTTTGATTGCCAGAATGCAGTCTACCACAAGATCTGGTTTGTCACTTGGTTTTGGGTTTGAAGAGATTCCAAAACTTGAAGCAACATGTTCTACACTGCGGTGGTGCAAAAAGATTCTTTCCTTCTGCAATCTTTCTCCTTCTTTAGAGGATGTTTTGGAGTCTACAGAAGACCTTCCTTATTCGTGTGGTTCTGGGGCTCTATTGAATCTACTGATTGGTGGAGTCAAATGGCTTAGGAGAGCCCTGGAGGTATTCTCTGGACCACAGAATTCTAGAAGAAGCAAGTCTAGTGAAGTTGAAGATATTATTAGAGATTACCAGACCATTAATATTCCTTTTGCGGCAGTAATTTGCCATCTTGAAGAAGCTATTGGAAAACATAGGTTGTGGCAAGAACAGGCGCATCAATTCCTTACTCTTCATTCTGGGGAACGGTCTTGGTTATCAATGTTGAAACTCAAGGAACTAGGTGATACTGTTGCTTTCAGCTGCACAGAACTGGATTCGATTTTATCTGAAGTTGAGAAGGTGGAGAATTGGAAGAAACACTGCATGGATTATGTAGGAAATTTAGTCCAAAATGAGAATTCACTGTTTCATGCTCTGCAGAAGATGAAACAGAGTCTTGATAGGTCATTGTCCATATATGGCAAGTTGAAAGACTTCAAGGAAGAATGTTTATGCATCTACTGCTTTACTGATTCTAAAGATCAGGAATTTCTTACTTGCTCCTCTTGTAGAAACTGCTATCATATACTGTGTATTGGACCATTGGTGGCCAATAGCCTTGAAAATTATACTTGCCCTTTTTGTAAAATATTGAAGGGTGAATCCAATTATAAGAAGGGAACTCTCCTTATGAGGTTAGGGGAGAAGCGTGCTGAACTGGAAGTTCTTCTACAACTCCTCTCTGATGCTAAAAATTTGTGTGTAAGGATTGATGAGATAGATGCTCTCAACCAACTTGTCGAGCAAGCACTTCTATGCAAATCTTACTTGAGAGAAATAGTGAACTTCACATCAGCTAATGTAGACAATGATCTTGGTATCATCTCTGAAAGATTGACCATAGCTATAAAGGCCTATGAGGTTGCTAGTGTATGTGATCATCAAGATGTACATGACCTTGAGTTGGCATTAGCAAGACACCTTTGGAAAATTCAAGTCAATGGAATGCTAAATAGTTCACTAAATCCTTCTATCCAAGAGGTTCAGAAGCATCTGAAAGAGGGACTGGCTATGGAAATATCACCTGAAGATCATTATATGCTGCCACTTGCAAACATGAATTGCTTATATTTGCAGTGGGCAGAACTAACCAAGAAGGCTGCAGTTGATTCTGGGGCGCTCAGCCTAGATAAAGTTTTTGAACTCATTGCAGAAGGTGAAAACTTGCCTGTTAATGTGGATGAGGATCTCAGGATTTTAAGGGCTCGAAGTATACTTTATTGCATTTGTCGAAAGCCCTTTGATCCTGGGAGTATGATTGCATGTAATCAGTGTGGTGAGTGGTATCACTTTGATTGCATGAAATTACCAGAGAGTCAAGAGTTCTACATTTGTCCTGCATGTAACCCCTCTACAACAGGAATGCCAACATCTCTGGCAGATCATGAGAGATTGAGTAGCGGTAAACTGGAGGAACCGAAAACGCCATCTCCGAGGCATACGAATCCAAGAAAGAAACAGAAGAAAGACGAGGCAATATGTGGAAGTGAGGATCAAATTCAAGTCAATAATTTTAGGAATGCGAGTGGGATAGAATGTGTTAGATGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTGTTGACCTTCGGAGTCTTTCTTCATTTCTATGTATACATAACAACATTAACTGA 5508 0.404 MGKGRPRAVEKGVAGQSLCVSPSGSLNIPSGPLYFPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFALDLDSFTFPTKTQEIHKLQARPAACDSKTFELEYSRFLEDHCGKKSRKKIVFEGEELDLCTLFNAVKRFGGYDKVVKKKKWGDVSRFVRPGRKITDCAKHVLSQLYCDHLYDYEDYYNQLNQETGKKGILEDEKSDHGVRSSGSKRMRRSFDCLKVKDCKVEKEEHDQICEQCRSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKQYTLETFRRVADRSRKRWFGPGPVSRVQIEKKFWEIVEGSVGEVEVVYGSDLDTSVFGSGFPRSTDQKPESIDSKLWDEYSSNPWNLNNLPKLKGSMLQAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSINYLHWGEPKCWYSVPGNEASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQEHGVPVYSIIQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKAAVLSHEELLCVVAQYSDIDTKASPYLKKELLRIYDKEKSWREKLWKNGIVKSSRMAPRQCPQYVGTEEDPSCIICQQYLYLSAVVCSCRPSSLVCLEHWKHLCECKTVKLRLLYRHSVAELYDLAFSMDNYTSEEKALGRNIRKNFSCLGTLTKKVKGGSITFSQLVVQWLLRSSEILQNPYSNDAFVSALREAEQFLWAGPEMNSVRDMVKNLIEAQKWAEGIRDCLRKIEAWLCDQDSNMEKVHLEFVDELLTFNSAPSCNEPAYHKLKEYKEGAVLLSQEINIALSKCSKMSELESLHSRACGSPIYVKDVKNLERKISSTKAWLHRARSCISIKHPAVVELDALFKLKSEIMELQVQLPEIEVIQNILIQVESCSSKCSETLQGPMTLKNVDLLLKEWDSFVVDIPEVKLLRQYYKDAVSWVANFNRALGTTHEREDQHHVTDELKGILEDGLSLKIQVDELPLVETELQKALCREKAQKAHKSKMSLESVQEVMKEATLLQIEGEKLFVGLSGVLAVATPWEERAKEILLHKASFSDFEDMIRTSESIFIILPSLNDVKEALLEANSWLMNSKPFLVSSSCPSDSLRKVEDLQMLVSQSKLIKITFEEIKMLEIVMHNCEEWEAEACSVLEDAQHIFELDDIVHGISNGLMAKVEGLIARMQSTTRSGLSLGFGFEEIPKLEATCSTLRWCKKILSFCNLSPSLEDVLESTEDLPYSCGSGALLNLLIGGVKWLRRALEVFSGPQNSRRSKSSEVEDIIRDYQTINIPFAAVICHLEEAIGKHRLWQEQAHQFLTLHSGERSWLSMLKLKELGDTVAFSCTELDSILSEVEKVENWKKHCMDYVGNLVQNENSLFHALQKMKQSLDRSLSIYGKLKDFKEECLCIYCFTDSKDQEFLTCSSCRNCYHILCIGPLVANSLENYTCPFCKILKGESNYKKGTLLMRLGEKRAELEVLLQLLSDAKNLCVRIDEIDALNQLVEQALLCKSYLREIVNFTSANVDNDLGIISERLTIAIKAYEVASVCDHQDVHDLELALARHLWKIQVNGMLNSSLNPSIQEVQKHLKEGLAMEISPEDHYMLPLANMNCLYLQWAELTKKAAVDSGALSLDKVFELIAEGENLPVNVDEDLRILRARSILYCICRKPFDPGSMIACNQCGEWYHFDCMKLPESQEFYICPACNPSTTGMPTSLADHERLSSGKLEEPKTPSPRHTNPRKKQKKDEAICGSEDQIQVNNFRNASGIECVRWQNRKPFRRAAKKRVDLRSLSSFLCIHNNIN 1835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0679 1835 SUPERFAMILY FYVE/PHD zinc finger 1693 1742 IPR011011 -
Alju12g0679 1835 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Alju12g0679 1835 Pfam PHD-finger 1696 1739 IPR019787 -
Alju12g0679 1835 Pfam PHD-finger 243 290 IPR019787 -
Alju12g0679 1835 ProSiteProfiles Zinc finger RING-type profile. 1441 1485 IPR001841 -
Alju12g0679 1835 SUPERFAMILY FYVE/PHD zinc finger 237 291 IPR011011 -
Alju12g0679 1835 SUPERFAMILY ARID-like 81 196 IPR036431 GO:0003677
Alju12g0679 1835 CDD ARID 100 188 - -
Alju12g0679 1835 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Alju12g0679 1835 FunFam Transcription factor jumonji (JmjC) domain-containing protein 20 121 - -
Alju12g0679 1835 SUPERFAMILY FYVE/PHD zinc finger 1435 1486 IPR011011 -
Alju12g0679 1835 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Alju12g0679 1835 SMART JmjN_1 30 71 IPR003349 -
Alju12g0679 1835 MobiDBLite consensus disorder prediction 1745 1782 - -
Alju12g0679 1835 Gene3D Cupin 18 127 - -
Alju12g0679 1835 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Alju12g0679 1835 Gene3D Cupin 266 553 - -
Alju12g0679 1835 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Alju12g0679 1835 Pfam PLU-1-like protein 943 1126 IPR013637 -
Alju12g0679 1835 Pfam PLU-1-like protein 895 984 IPR013637 -
Alju12g0679 1835 Pfam PLU-1-like protein 1141 1395 IPR013637 -
Alju12g0679 1835 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 1033 - -
Alju12g0679 1835 SMART ARID_2 95 188 - -
Alju12g0679 1835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1683 1739 IPR013083 -
Alju12g0679 1835 Pfam ARID/BRIGHT DNA binding domain 112 188 IPR001606 GO:0003677
Alju12g0679 1835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1427 1486 IPR013083 -
Alju12g0679 1835 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Alju12g0679 1835 ProSitePatterns Zinc finger PHD-type signature. 1697 1737 IPR019786 -
Alju12g0679 1835 MobiDBLite consensus disorder prediction 1753 1782 - -
Alju12g0679 1835 CDD PHD_RSF1 244 288 - -
Alju12g0679 1835 SMART PHD_3 1696 1738 IPR001965 -
Alju12g0679 1835 SMART PHD_3 1440 1485 IPR001965 -
Alju12g0679 1835 SMART PHD_3 243 289 IPR001965 -
Alju12g0679 1835 SMART bright_3 99 193 IPR001606 GO:0003677
Alju12g0679 1835 FunFam Predicted protein 349 552 - -
Alju12g0679 1835 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Alju12g0679 1835 SUPERFAMILY Clavaminate synthase-like 317 565 - -
Alju12g0679 1835 Pfam jmjN domain 32 65 IPR003349 -
Alju12g0679 1835 SMART cupin_9 381 547 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0679 Alju-ChrAlju12 13080661 13111259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0679 40 95 JUMONJI Transcription Factor Family AT4G20400 50.000 1.25e-09 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Alju12g0679 PLU-1 1.1e-08 No_clan