Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0647 ATGTCGTTCATCGGGACCCAACAAAAATGCAAGGCTTGTGATAAAACTGCTCATTTCGTGGATTCAGTATCAGCAGATGGAGCCATTTATCATAAGACATGCTTCAAATGCAGTCAGTGTAACGGCGTCCTTGCGATAAGCACGTACTCATCGGTGGATGGAGTGTTGTATTGCAAGCCTCATTTTGAGCAGCTTTTCAAGAGCAGTGGCGGTCTCACCAGGAGATCCCTATCAACTGGAAAGAGTGAGCTGGCAAGGGCACCAAGCAAATTGTCGGTCATGTTCTCAGGAACTCAAGACAAATGCTCTTCTTGCAAGAAAACTGTCTACCCTCTGGAAAAGGTGACAGTGGAAGGAGAATTCTATCACAAGTCATGCTTCAGGTGTGCACAAGGAGGCTGTTTTCTGAGCCCATCAAACTACGCAGCTCTTGATGGGTTTTTATACTGTAAGCATCATTTTGCTCAGTTGTTCAAAGAGAAAGGCAGCTACTCCCACGTGTCCCAATCTTCTTCCTTGAAGAAGAACAAGTCTGAATCTGCTGCTTCATCTGATCAAGAGGATTCGGCAGCTGATCCTACTCCTCCTCCTCTAAATGGTGATGATCAACCACAAGAAGTTTCTGAATAG 630 0.454 MSFIGTQQKCKACDKTAHFVDSVSADGAIYHKTCFKCSQCNGVLAISTYSSVDGVLYCKPHFEQLFKSSGGLTRRSLSTGKSELARAPSKLSVMFSGTQDKCSSCKKTVYPLEKVTVEGEFYHKSCFRCAQGGCFLSPSNYAALDGFLYCKHHFAQLFKEKGSYSHVSQSSSLKKNKSESAASSDQEDSAADPTPPPLNGDDQPQEVSE 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0647 209 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Alju12g0647 209 Pfam LIM domain 102 157 IPR001781 -
Alju12g0647 209 Pfam LIM domain 10 65 IPR001781 -
Alju12g0647 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Alju12g0647 209 FunFam LIM domain and actin-binding 1 96 166 - -
Alju12g0647 209 MobiDBLite consensus disorder prediction 169 209 - -
Alju12g0647 209 PANTHER OS06G0237300 PROTEIN 84 184 - -
Alju12g0647 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 167 - -
Alju12g0647 209 Gene3D Cysteine Rich Protein 96 166 - -
Alju12g0647 209 Gene3D Cysteine Rich Protein 4 72 - -
Alju12g0647 209 MobiDBLite consensus disorder prediction 169 190 - -
Alju12g0647 209 ProSiteProfiles LIM domain profile. 100 160 IPR001781 -
Alju12g0647 209 SMART lim_4 9 61 IPR001781 -
Alju12g0647 209 SMART lim_4 101 153 IPR001781 -
Alju12g0647 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 72 - -
Alju12g0647 209 CDD LIM2_SF3 102 162 - -
Alju12g0647 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 94 127 - -
Alju12g0647 209 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Alju12g0647 209 FunFam LIM domain and actin-binding 1 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0647 Alju-ChrAlju12 12036457 12039303 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Alju12g0647 LIM 8.6e-12 CL0167