Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0627 ATGGCAACCATTCGTGCAGATGAGATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAGATTGTAAATACTGGTACCGTACTTCAAGTAGGCGATGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTTTGAATTTGGAATCAAATAATGTTGGTGTTGTATTAATGGGTGACGGTTTGATGATACAAGAGGGAAGTTCTGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGCTTATTTGGGTCGTGTTATAAATGCCTTGGCTAAACCTATTGATGGTCGAGGAGAAATTTCAGCTTCTGAATCTCAGTTAATTGAATCTCCCGCTCCCGGTATTATTTCGAGACGTTCCATATATGAGCCTCTTCAAACCGGACTTATTGCTATTGATTCGATGATCCCTATAGGGCGTGGTCAGCGAGAATTAATTAATGGGGACAGACAAACCGGTAAAACAGCAGTAGCCACGGATACCATTCTCAATCAACAAGGACAAAATGTAATATGTGTTTATGTAGCTATCGGTCAAAAAGCCTCTTCTGTGGCTCAAGTGGTGACTACTTTACAAGAAAGGGGAGCAATGGAATACACTATTGTAGTAGCCGAAATGGCGGATTCTCTAGCTACATTACAATACCTCGCTCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTATCGTGAACGACACACTTTAATCATTTATGATGATCCCTCCAAACAAGCACAGGCTTATCGACAAATGTCTCTTCTATTACGAAGACTATCGGGTCGCGAAGCTTATCCAGGAGATGTTTTTTATTTGCATTCACGCCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAAAAGTTGAGACCCAATCGGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTCTTATCCGCCGATCTATTCAATGCTGGAATCAGACCTGCGATTAATGTGGGTAGTTCCGTTTCTAGAGTAGGATATGCGGTTCAAATTAAAGCCATGAAACAAGTAGCTGGTAAATTGAAATTAGAATTGGCACAATTCGCAGAATTAGAAGCTTTTTCACAATTCGCTTTTGATCTCGATAAAGCTACTCAAAATCAATTGGCAAGAGGTCAACGGTTGCACGAGTTGCTCAAACAATCCCAATCAGACCCTCTCACTGTGGAAGAACAGATAATAACTATTTATACCGGAACGAATGGTTATCTTAATTCATTAGAAATTGGACAGGTAAGGAAATTTCTTGTTGAATTACGTGCTTACTTAAAAACAAATAAACCTCAATTCCAAGAAATCATATCTTCTACCAAGACATTCACTTGGGAAGCAGAAGCCCTTTTGAAAGAAGCTATTCAGGAACAGATGGAACTTTTTTTACTTCAGGAACAAGTAGAAAAAAATTGA 1533 0.3881 MATIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEISASESQLIESPAPGIISRRSIYEPLQTGLIAIDSMIPIGRGQRELINGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAEMADSLATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRLSGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPKVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGSSVSRVGYAVQIKAMKQVAGKLKLELAQFAELEAFSQFAFDLDKATQNQLARGQRLHELLKQSQSDPLTVEEQIITIYTGTNGYLNSLEIGQVRKFLVELRAYLKTNKPQFQEIISSTKTFTWEAEALLKEAIQEQMELFLLQEQVEKN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0627 510 CDD ATP-synt_F1_alpha_C 376 501 IPR000793 GO:0015986
Alju12g0627 510 Hamap ATP synthase subunit alpha [atpA]. 2 502 IPR005294 GO:0015986|GO:0045261|GO:0046933
Alju12g0627 510 CDD F1-ATPase_alpha_CD 95 368 IPR033732 GO:0032559
Alju12g0627 510 FunFam ATP synthase subunit alpha 373 503 - -
Alju12g0627 510 NCBIfam F0F1 ATP synthase subunit alpha 4 498 IPR005294 GO:0015986|GO:0045261|GO:0046933
Alju12g0627 510 Gene3D - 1 94 IPR023366 -
Alju12g0627 510 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 95 IPR036121 GO:0046034|GO:1902600
Alju12g0627 510 Gene3D - 373 501 IPR038376 -
Alju12g0627 510 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 93 IPR004100 GO:0046034|GO:1902600
Alju12g0627 510 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 2 501 IPR005294 GO:0015986|GO:0045261|GO:0046933
Alju12g0627 510 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 150 365 IPR000194 GO:0005524
Alju12g0627 510 FunFam ATP synthase subunit alpha 95 372 - -
Alju12g0627 510 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 373 500 - -
Alju12g0627 510 Gene3D - 95 372 IPR027417 -
Alju12g0627 510 Pfam ATP synthase alpha/beta chain, C terminal domain 372 496 IPR000793 GO:0015986
Alju12g0627 510 CDD ATP-synt_F1_alpha_N 28 94 - -
Alju12g0627 510 FunFam ATP synthase subunit alpha 1 94 - -
Alju12g0627 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 370 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0627 Alju-ChrAlju12 10643134 10644666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0627 87 399 Primary Pumps ATPases(2) AT4G38510 27.887 1.26e-27 114