Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0614 ATGGAGCCGGATGAGTTCTCTTTGGATTCACCTAAAGGAGATGGACCACAGTTATGTTTTTCAACCCCTGTTTCACGGAGAAGAGGACGAGCTAGACGCTCATCAAAGGGGTGCTGGACAGAGGAAGAGGACAGCCGTTTGATTGAGGAAGTCAAGAAGCACAACGGAAGGAACTGGAAGAAAATAGCTGCATATTTCCCAGGGAGAACTGATGTCCAATGCTTGCATCGCTGGCAAAAAGTTCTAAATCCTGAACTTGTCAGGGGATCGTGGACAAAGGAGGAGGATGATTGTATAATTGAGCTCGTCACGAAGTATGGTTGCAGGAAATGGTCCATTATTGCAAAACACTTACCTGGTCGCATAGGGAAGCAATGCCGAGAGAGGTGGCATAATCACTTGGACCCAGCTATAAAGAAAGATGCATGGACAGAGGAAGAGGAAGCCACGCTTGCTTTCTATCGCCAAATATATGGTAGCAAGTGGACCGAAATTGCAAGGTTTCTCCCTGGAAGGCCTGACAATGCCATTAAAAATCATTGGAACTGTTCAATGAAGAAGAAGTTGGAGGCATCCTCACCTGGATGTGATGCAAATACTGCTGCCTGTGATTCCAGCAATCTCAGAATCACTATGTTGGTTAAAGAAGATCAGAACCTCGTTTCTCCTAAAAGGAGCTGCAGATTGAATTTCAATAAAGATTCCTCCTTGACAAAATTGATTGCTCCGAATACATGTGAGGGGATTTGTGTTGGCATCTCACAAGATGAGCACAGATTGATCTCCTCACCGAAAAGAGTTGTCAACCGACCCATAACTCCTTTTGATGTTCCTCAAGTCAGGCTTGCTGCTGAACTAGATCGTGTTACTATTGAAGCTGCCAGTACTATCCCTAATGAGCTGTCTAAGTCTTGTTCAGATGCGACGTATTTCGGGGATGGTGAGTGTTTCAGTCCTCTTTCGAGCCTATCAGTATTGGCTAGTTTCAAGGAGGAAGCTCAAGTTGAATCGAGAAATAAAAGAAACAGATCTCAAAGTCGAAACTTGTATCCTGCAAAGTTATCTCTGTTGGAAGATTTGGCTTCCTCCACAGAATCTAGGAAAGAAAACCTCATCAATGGTTATTATTGTCATACTCTTCCCAAGTCCACGGCAGCCAGTAGCCCTGAATCTGTCCTGAGGAGCTTAGCTATGACCTATGACAATATGCCTTCCATCATTAGGAGGAGAGTTCATAGTAAAACGACTCCCGAAGCTGTATGTGTTGGTGCGAATGGGTTACACAAATTGAATTTGAAGCAGGGTGGTGCCATGTTCATGTCTAAATCAATGACCTCTGCCAGATCTCTCTTCAAAGGGCATTGA 1365 0.444 MEPDEFSLDSPKGDGPQLCFSTPVSRRRGRARRSSKGCWTEEEDSRLIEEVKKHNGRNWKKIAAYFPGRTDVQCLHRWQKVLNPELVRGSWTKEEDDCIIELVTKYGCRKWSIIAKHLPGRIGKQCRERWHNHLDPAIKKDAWTEEEEATLAFYRQIYGSKWTEIARFLPGRPDNAIKNHWNCSMKKKLEASSPGCDANTAACDSSNLRITMLVKEDQNLVSPKRSCRLNFNKDSSLTKLIAPNTCEGICVGISQDEHRLISSPKRVVNRPITPFDVPQVRLAAELDRVTIEAASTIPNELSKSCSDATYFGDGECFSPLSSLSVLASFKEEAQVESRNKRNRSQSRNLYPAKLSLLEDLASSTESRKENLINGYYCHTLPKSTAASSPESVLRSLAMTYDNMPSIIRRRVHSKTTPEAVCVGANGLHKLNLKQGGAMFMSKSMTSARSLFKGH 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0614 454 Gene3D - 141 207 - -
Alju12g0614 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 189 IPR017930 -
Alju12g0614 454 SUPERFAMILY Homeodomain-like 85 181 IPR009057 -
Alju12g0614 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 138 IPR017930 -
Alju12g0614 454 FunFam Transcriptional activator Myb isoform A 35 87 - -
Alju12g0614 454 Gene3D - 88 139 - -
Alju12g0614 454 ProSiteProfiles Myb-like domain profile. 83 134 IPR001005 -
Alju12g0614 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 82 IPR017930 -
Alju12g0614 454 PANTHER MYB PROTEIN-RELATED 36 107 - -
Alju12g0614 454 ProSiteProfiles Myb-like domain profile. 135 185 IPR001005 -
Alju12g0614 454 CDD SANT 142 182 IPR001005 -
Alju12g0614 454 Pfam Myb-like DNA-binding domain 36 82 IPR001005 -
Alju12g0614 454 Pfam Myb-like DNA-binding domain 88 134 IPR001005 -
Alju12g0614 454 Pfam Myb-like DNA-binding domain 140 182 IPR001005 -
Alju12g0614 454 SMART sant 87 136 IPR001005 -
Alju12g0614 454 SMART sant 35 84 IPR001005 -
Alju12g0614 454 SMART sant 139 187 IPR001005 -
Alju12g0614 454 CDD SANT 39 82 IPR001005 -
Alju12g0614 454 Gene3D - 35 87 - -
Alju12g0614 454 CDD SANT 90 134 IPR001005 -
Alju12g0614 454 SUPERFAMILY Homeodomain-like 34 96 IPR009057 -
Alju12g0614 454 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Alju12g0614 454 MobiDBLite consensus disorder prediction 1 35 - -
Alju12g0614 454 FunFam Transcriptional activator Myb isoform A 88 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0614 Alju-ChrAlju12 10409146 10412637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0614 24 410 MYB Transcription Factor Family AT5G02320 41.769 1.79e-80 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju12g0614 Myb_DNA-binding 2.9e-17 CL0123