LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju12g0597	ATGGACTTTCTCAGAGAAGATCAATTGGACAATTTTTCTTCTTCTTCTTTGTCTTCGTCGGAGGTGAGCTTGTCTAGCGGAGAGCCGATACTGTTACTGGCGTCGGAGCGGCCCAAGAAGCGAGCGGGACGGAGGGTTTTCAAGGAGACTAGGCATCCCGTTTTCAGAGGAGTGCGACGGAGGAACAACGACAAGTGGGTTTGTGAGGTTCGTGTGCCGAACGGCAACACCAGGATTTGGCTCGGAACATATTCCACGGCGGAGATGGCCGCTCGTGCTCATGACGTGGCGGCACTGGCTCTTCGTGGCAAGTCGGCTTGCCTGAATTTCGCTGACTCCGCTTGGCGTTTGCCTGTACCGGAGTCCACCAATGCGGCGGAGATAAGGCGGGTGGCGGCTCTGGCTGCTGAGGAATTCGGCCGGAGTATGGATGATTCCGAGGTTTGCAGTAGCAGTAGTACCACGGTCAACGATGACGTCATCGGAGATGTGTCGAATGTACAGCAATACTCTGAGGAAGAAGCGACGTATATTAATCAAACTCCAGCAGTGTCAACAACAGAGTTTGATCACGAGCTCCGTCATTGGCTAGTGCGTATGGCGGAGGAGCCTCTCCGATCGCCACCCTCAGTTGGACCATATGGCTGGAGGTGGAATGACGTGGAGGTTGAGCCTCTGGTCTCACTGTGGCAGTATTGA	699	0.5451	MDFLREDQLDNFSSSSLSSSEVSLSSGEPILLLASERPKKRAGRRVFKETRHPVFRGVRRRNNDKWVCEVRVPNGNTRIWLGTYSTAEMAARAHDVAALALRGKSACLNFADSAWRLPVPESTNAAEIRRVAALAAEEFGRSMDDSEVCSSSSTTVNDDVIGDVSNVQQYSEEEATYINQTPAVSTTEFDHELRHWLVRMAEEPLRSPPSVGPYGWRWNDVEVEPLVSLWQY	232

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju12g0597	232	ProSiteProfiles	AP2/ERF domain profile.	54	111	IPR001471	GO:0003700\|GO:0006355
	Alju12g0597	232	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	7	232	IPR045277	GO:0003700
	Alju12g0597	232	SUPERFAMILY	DNA-binding domain	54	113	IPR016177	GO:0003677
	Alju12g0597	232	MobiDBLite	consensus disorder prediction	1	22	-	-
	Alju12g0597	232	PRINTS	Ethylene responsive element binding protein signature	55	66	IPR001471	GO:0003700\|GO:0006355
	Alju12g0597	232	PRINTS	Ethylene responsive element binding protein signature	77	93	IPR001471	GO:0003700\|GO:0006355
	Alju12g0597	232	Gene3D	AP2/ERF domain	54	112	IPR036955	GO:0003700\|GO:0006355
	Alju12g0597	232	CDD	AP2	55	113	IPR001471	GO:0003700\|GO:0006355
	Alju12g0597	232	MobiDBLite	consensus disorder prediction	8	22	-	-
	Alju12g0597	232	FunFam	Ethylene-responsive transcription factor 2	53	112	-	-
	Alju12g0597	232	SMART	rav1_2	54	117	IPR001471	GO:0003700\|GO:0006355
	Alju12g0597	232	Pfam	AP2 domain	53	103	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju12g0597	Alju-ChrAlju12	9596883	9597581	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju12g0597	31	209	AP2-EREBP Transcription Factor Family	AT1G12610	56.983	5.25e-59	183

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju12g0597		AP2	1.4e-13	CL0081