LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju12g0596	ATGGAATTTTTCAGACAACACGCATTTGACGCTTCTTCTTCATCTTCGTCGGAGGTGACCTCGTCCAGTGGAGAGCCGATATTGTTTCTGGCATCAGAGCGACCCAAGAAGCGAGCGGGACGAAGGGTTTTCAAGGAGACTAGGCATCCCGTTTACAGAGGAGTGCGACGGAGGAACAACGATAAGTGGGTGTGCGAGGTTCGTGTGCCGAACGGCAACACCAGGATTTGGCTCGGAACATATTCCACGGTGGAGATGGCAGCTCGTGCTCATGACGTGGCGGCACTGGCTCTTCGTGGCAAGTCGGCTTGCCTGAATTTCGCTGACTCCGCTTGGCGGTTGCCCCTGCCGGAGTCAACCAACGCGGCGGAGATCAGGCGGGTGGCGGCTCTGGCTGCTGAGAAATTCGGGCGCAGTATGGATGATTCTGAGGTTAGCAGTCGCAGTAGTAACCCGATCAACGACGATGTCATCGGAGTTGCTTCGAATGTACAGGATTATTGTGAAGAAAAAGCGATGTACATTAATCAAGCTCCGGCAGTGTCCACGACGGAGTTCGACGAGCTCCGTCATTTGCTAGTGAGCATTGCGGAGGAGCCTCTCCGATCGCCACCCTCTTTTAGGCCATATGGTCGGAGCTGGAATGACGTGGATGTTGATACTGAGGTCTCACTGTGGCAGTATTGA	687	0.5429	MEFFRQHAFDASSSSSSEVTSSSGEPILFLASERPKKRAGRRVFKETRHPVYRGVRRRNNDKWVCEVRVPNGNTRIWLGTYSTVEMAARAHDVAALALRGKSACLNFADSAWRLPLPESTNAAEIRRVAALAAEKFGRSMDDSEVSSRSSNPINDDVIGVASNVQDYCEEKAMYINQAPAVSTTEFDELRHLLVSIAEEPLRSPPSFRPYGRSWNDVDVDTEVSLWQY	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju12g0596	228	PRINTS	Ethylene responsive element binding protein signature	74	90	IPR001471	GO:0003700\|GO:0006355
	Alju12g0596	228	PRINTS	Ethylene responsive element binding protein signature	52	63	IPR001471	GO:0003700\|GO:0006355
	Alju12g0596	228	CDD	AP2	52	110	IPR001471	GO:0003700\|GO:0006355
	Alju12g0596	228	SMART	rav1_2	51	114	IPR001471	GO:0003700\|GO:0006355
	Alju12g0596	228	FunFam	Ethylene-responsive transcription factor 2	50	109	-	-
	Alju12g0596	228	MobiDBLite	consensus disorder prediction	1	22	-	-
	Alju12g0596	228	MobiDBLite	consensus disorder prediction	8	22	-	-
	Alju12g0596	228	Gene3D	AP2/ERF domain	51	109	IPR036955	GO:0003700\|GO:0006355
	Alju12g0596	228	Pfam	AP2 domain	50	100	IPR001471	GO:0003700\|GO:0006355
	Alju12g0596	228	SUPERFAMILY	DNA-binding domain	51	110	IPR016177	GO:0003677
	Alju12g0596	228	ProSiteProfiles	AP2/ERF domain profile.	51	108	IPR001471	GO:0003700\|GO:0006355
	Alju12g0596	228	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	7	228	IPR045277	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju12g0596	Alju-ChrAlju12	9586312	9586998	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju12g0596	28	228	AP2-EREBP Transcription Factor Family	AT1G12610	51.923	8.28e-60	185

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju12g0596		AP2	4.6e-14	CL0081