Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0589 ATGCATATGCTTGTGTGGAACAAACAAAAATATGGAAATACTGATATAGAAGATGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCCTTGTTCAATTGCGTCAATTGGGTGGAAAGCAACTCGTGGGATGGACGATATGGAATGGTTTATGCTGAAGGACCGGCTCGGCTTACTGGTGGAGCTGCTGCTATTGCCTTATTAATTGGTCCTAATGCTTCCATTGTTCCTGGAAGCAAATTGAGAGGAACTCATATGTCTCATGCCTATGACTTTTACAAGCCTAATCTTGCAAGTGAATATCCTGTAGGCTTTTTTGCAACTCTGAAATATGAGAAACTTGAGAGGAAGCAGTTTTTCATTTATGATACTGACTATTTTGTCTTTCACTCTCCTTATAACAAGCTTGTGCAGAAAAGTTTTGTTCGTTTGTTGTTCAATGACGTCTTAAGGAATCCCAGCTCTTTGGATGAGGTTGAGGACAAGCTGGAATCTTTCTCAAACTTATCCGTTGATGAAAGCTATCAAAGCCGAGATCTTGAAAGGATATCCCAGCAGGTTTCAAGATCTCTATACGATTCAAAGGTGGAACCAACCACTATGATACCTAAACAAGTTGGCGATGTGTACACTGCATCTTTTATGCAGCTTTTGTGCAAGAGAGTGATACTATTCTCATATGGAAGTGGCCTTACTGCTACAATATTTTCCTTGCGATTACATGATGGTCAGCATCCGTTTAGCTTGTCCAACATCGCTACAGTGATGGATATTATTGGAAAATTGAAGTCAAAGCATGAGGTATATTTTCCCTGGTCGCCTCCATTGTGTGTTATTGCCGAAATGGCATCGTATAGGGAGTATGAGAAGGATCACGACGGCGATGGTGAAGCGTCGGAGCTCAGCAACATGGCCAGTGAGCCGGAACAAGACCCTGCAACTACGAGCACCACCTATGAGGGTACGAGTAGTACGACGGCGTTTCAAGTGTTGCCGTTGAAGGACGAGCCAAATGATTCGGACTCCGACCGGAAGAGTGAGGCGCCGCCTCAAGTCGGGGCTGATCAGGCGGCGATTCAAATGCATATGCCAATGCACTTGCCGGCGACAACAACTCGACGGTCATCCACCAAGGACCGCCACACCAAGGTGGAAGGTCGGGGACGGAGGATCCGAATACCAGCCACATGTGCGGCTCGGATCTTTCAGCTCACTCGGGAGTTAGGCCACAAGTCTGACGGCGAAACTGTGCGGTGGCTTCTCGAACACGCTGAGCAGGCTATCATCGAGGCCACCGGCACCGGCACAGTTCCGGCCATCGCCATCTCTGTCGGCGGAACTCTTAAAATTCCCATGACGTCCAACAATTCCAATGCCGAAGCCAACAAGAAGCGGAGACAACCATCAAATAGCGAGTTCGTGGACAAAAACGACGCCGTTTCGCAGTCTCATGGTTTGGCGCCGATTCAACCCGCGGTTCCTCAAGGTCTCGTGCCGGTGTGGGCAGTGGGAAACACTGGTATGGTGGTTCCAGCAAACGCCTTCTGGATGATCCCTCCGGCTGCTACGGCGCCATTGGCAACCGGAGTGACTCTATCGCTCAATCAACAACCTCAGGTATGGGCTTTCTCTCCAGCGGCAACTCCCGTATTCAACATGCCGGCGAGACCCATGGAAACAAAAACTAGTATCCTCACCGGCGTAGAAGCTTCCGGCAGCAGGTCTAACTCAGGGGTGAGCACTATCACGGCGGGGCCGAAGGTGGCGCAGAGCTCAACCATGGCACCGAGCGTGAGCTCAAGTGGGAGTGTTAGCGGCAGCAAGGCACAGATGCTGAGGGATTTTTCTTTGGAGATTTACGATAAGCATGAGCTACAATTAATGGGGCGGCGATCAGAGGAAGAAGCCGCGGAAGCTTGGAAACAATGA 1932 0.4928 MHMLVWNKQKYGNTDIEDVDSTNACYGGTAALFNCVNWVESNSWDGRYGMVYAEGPARLTGGAAAIALLIGPNASIVPGSKLRGTHMSHAYDFYKPNLASEYPVGFFATLKYEKLERKQFFIYDTDYFVFHSPYNKLVQKSFVRLLFNDVLRNPSSLDEVEDKLESFSNLSVDESYQSRDLERISQQVSRSLYDSKVEPTTMIPKQVGDVYTASFMQLLCKRVILFSYGSGLTATIFSLRLHDGQHPFSLSNIATVMDIIGKLKSKHEVYFPWSPPLCVIAEMASYREYEKDHDGDGEASELSNMASEPEQDPATTSTTYEGTSSTTAFQVLPLKDEPNDSDSDRKSEAPPQVGADQAAIQMHMPMHLPATTTRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAISVGGTLKIPMTSNNSNAEANKKRRQPSNSEFVDKNDAVSQSHGLAPIQPAVPQGLVPVWAVGNTGMVVPANAFWMIPPAATAPLATGVTLSLNQQPQVWAFSPAATPVFNMPARPMETKTSILTGVEASGSRSNSGVSTITAGPKVAQSSTMAPSVSSSGSVSGSKAQMLRDFSLEIYDKHELQLMGRRSEEEAAEAWKQ 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0589 643 SUPERFAMILY Thiolase-like 12 73 IPR016039 GO:0016746
Alju12g0589 643 Pfam TCP family transcription factor 377 461 IPR017887 -
Alju12g0589 643 Gene3D - 3 273 IPR016039 GO:0016746
Alju12g0589 643 SUPERFAMILY Thiolase-like 80 271 IPR016039 GO:0016746
Alju12g0589 643 MobiDBLite consensus disorder prediction 290 354 - -
Alju12g0589 643 MobiDBLite consensus disorder prediction 570 606 - -
Alju12g0589 643 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 9 74 IPR013528 -
Alju12g0589 643 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 12 104 - -
Alju12g0589 643 MobiDBLite consensus disorder prediction 304 332 - -
Alju12g0589 643 ProSiteProfiles TCP domain profile. 378 432 IPR017887 -
Alju12g0589 643 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 79 269 IPR013746 GO:0004421|GO:0006084|GO:0010142
Alju12g0589 643 CDD init_cond_enzymes 12 239 - -
Alju12g0589 643 MobiDBLite consensus disorder prediction 452 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0589 Alju-ChrAlju12 9376623 9381988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0589 374 626 TCP Transcription Factor Family AT2G45680 50.000 4.42e-64 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Alju12g0589 HMG_CoA_synt_C 2e-50 CL0046