Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0578 ATGGCTCACAAAGTTGCCTTCACATTAACGAGCTCTCGTCCCTTCACTGCCCCTAACCCAAGACCCTTCATTCCAATTTCTTCCTTACCCTCTTCTTCTTCTGGTGGGGTCCACTTGATTCAGTTCAATGGCCGCCGCTACTTCTGCCTTCGCCGCCGCGGTATTTTTCTGTTGCCCCCTAATAAGGCCACCACGGATCAACAAGGTGTCACTCCACCACCACCACCTTCAGGCAAGGTTGAAGAAAGCGAAGAAGCCGTTGACAGTAAAATCCTTCCGTATTGTAGCATAGACAAAAAAGAGAAGAAATCAGTCGGCGAGATGGAACAAGAATTTCTTCAAGCACTGCAAGCTTTCTACTATGAGGGAAAAGCTATTATGTCAAATGAGGAATTTGATAATCTTAAGGAGGAACTTATGTGGGAAGGAAGCAGTGTTGTGATGCTAAGTGCTGATGAACAAAAATTTCTGGAAGCTTCAATGGCTTATGTTTCTGGAAAACCAATTATGAACGATAAAGAGTTTGATGAATTGAAGCTGAGACTAAAGATAGAAGGAAGTGAAATTGTGGCTGAGGGTCCACGGTGCAGTCTTCGTAGTAGAAAGGTTTACAGTGACTTATCTATTGATTACTTAAAGATGCTCTTACTGAAAGTCCCAGCAACCGTCGTTTCATTAGGATTGTTCTTTTTCTTTGATGAATTGACTGGATTTGAGGTCTCGAATCTGATAGAGATTCCGGAGCCCTTTAGCTTCATTCTTACATGGTTTGCAGCAGTTCCCTTCATTCTGTGGCTAGCTCAGGCTCTCACAAATGCAGTTATAAAAGACTCCCTGATTTTGAAGGGCCCTTGTCCAAACTGTGGTACTGAAAATACTTCCTTCTTTGGGACCATACTGTCAATTTCAAGTGGAGGTTCTTCCAACACTGTGAAATGCACCAACTGTGGCACTCCAATGCTGTATGATTCTGCTACAAGATTGATTACATTACCAGAAGGAAAGAGATCGAAGGATCGTACCTTCGTGGGCAACACGAAGGCATTTTGCGCTGTGTATATAAGAATCCACGTACTAGTCAATGACCATATCTATCATACAATCGCATTATATCCAAAAGCCTCAAACATGGCTTCCATTATTCGCTTCGGTAGCTTCTTGTTACTTTCATGGATCCTCACAGTTGTCGGAAACCTAGCAGCTGCCACCGGAGTGTTCCGACCAAACCCATGGGCTCTTGCTCACGCCACCTTTTATGGCGACGACACAGCTTCTGCTACAATGGGAGGAGCGTGTGGGTACGGGAACTTGTTCATGAACGGATACGGCACAGACACAGTAGCACTAAGCTCCACACTCTTCAACAATGGCTTCGCTTGCGGCACATGTTACCAAATCAAATGCTACCAATCAAGTGCCTGTCACAAAGACGTCTCGTTCACCACCGTGACGGCCACCAACCTCTGCCCACCAAACTGGGCCCAACCCTCCGACAACGGCGGCTGGTGCAACCCGCCACGCGTACATTTCGACATGTCAAAGCCAGCATTCATGAAAATAGCCGACTGGAACGCCGGCATCGTGCCGGTAGTGTACCGGCGAGTGCTGTGCCAGAGAAACGGAGGGCTGAGATTCGCGTTCCAAGGGAACGGCTATTGGTTGCTTGTGTATGTGATGAATGTCGGTGGAGGAGGAGACATAGGAAACATATGGGTGAAAGGAAGCAGAACGGGATGGATTAGTATGAGCCATAATTGGGGAGCTTCGTATCAAGCTTTTGCGACGTTAGGTGGACAAGATTTGTCGTTTAAGATAACGTCGTACACCACAAAACAGACTGTTATTTCTTGGAATGTTGCTCCTTCTGGTTGGTCTGTTGGTCTTACTTATTCCTCCAACGTTAACTTTCACTGA 1914 0.4613 MAHKVAFTLTSSRPFTAPNPRPFIPISSLPSSSSGGVHLIQFNGRRYFCLRRRGIFLLPPNKATTDQQGVTPPPPPSGKVEESEEAVDSKILPYCSIDKKEKKSVGEMEQEFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSADEQKFLEASMAYVSGKPIMNDKEFDELKLRLKIEGSEIVAEGPRCSLRSRKVYSDLSIDYLKMLLLKVPATVVSLGLFFFFDELTGFEVSNLIEIPEPFSFILTWFAAVPFILWLAQALTNAVIKDSLILKGPCPNCGTENTSFFGTILSISSGGSSNTVKCTNCGTPMLYDSATRLITLPEGKRSKDRTFVGNTKAFCAVYIRIHVLVNDHIYHTIALYPKASNMASIIRFGSFLLLSWILTVVGNLAAATGVFRPNPWALAHATFYGDDTASATMGGACGYGNLFMNGYGTDTVALSSTLFNNGFACGTCYQIKCYQSSACHKDVSFTTVTATNLCPPNWAQPSDNGGWCNPPRVHFDMSKPAFMKIADWNAGIVPVVYRRVLCQRNGGLRFAFQGNGYWLLVYVMNVGGGGDIGNIWVKGSRTGWISMSHNWGASYQAFATLGGQDLSFKITSYTTKQTVISWNVAPSGWSVGLTYSSNVNFH 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0578 637 MobiDBLite consensus disorder prediction 60 83 - -
Alju12g0578 637 Gene3D - 542 637 IPR036749 -
Alju12g0578 637 Gene3D - 398 538 IPR036908 -
Alju12g0578 637 PRINTS Expansin/Lol pI family signature 525 541 IPR007118 GO:0005576
Alju12g0578 637 PRINTS Expansin/Lol pI family signature 428 446 IPR007118 GO:0005576
Alju12g0578 637 PRINTS Expansin/Lol pI family signature 579 593 IPR007118 GO:0005576
Alju12g0578 637 PRINTS Expansin/Lol pI family signature 410 425 IPR007118 GO:0005576
Alju12g0578 637 PRINTS Expansin/Lol pI family signature 618 632 IPR007118 GO:0005576
Alju12g0578 637 PRINTS Expansin/Lol pI family signature 450 468 IPR007118 GO:0005576
Alju12g0578 637 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 552 632 IPR007117 -
Alju12g0578 637 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 1 336 IPR039987 GO:0009535|GO:0009773|GO:0016730
Alju12g0578 637 CDD DPBB_EXPA_N 410 537 - -
Alju12g0578 637 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 429 542 IPR007112 -
Alju12g0578 637 Pfam Expansin C-terminal domain 544 621 IPR007117 -
Alju12g0578 637 PRINTS Expansin signature 553 574 IPR002963 GO:0009664
Alju12g0578 637 PRINTS Expansin signature 618 634 IPR002963 GO:0009664
Alju12g0578 637 PRINTS Expansin signature 481 491 IPR002963 GO:0009664
Alju12g0578 637 PRINTS Expansin signature 517 530 IPR002963 GO:0009664
Alju12g0578 637 PRINTS Expansin signature 541 553 IPR002963 GO:0009664
Alju12g0578 637 PRINTS Expansin signature 500 517 IPR002963 GO:0009664
Alju12g0578 637 PRINTS Expansin signature 441 455 IPR002963 GO:0009664
Alju12g0578 637 SUPERFAMILY PHL pollen allergen 539 632 IPR036749 -
Alju12g0578 637 SUPERFAMILY Barwin-like endoglucanases 410 560 IPR036908 -
Alju12g0578 637 SMART dpbb_1 446 532 IPR007112 -
Alju12g0578 637 Pfam Lytic transglycolase 446 532 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0578 Alju-ChrAlju12 8844980 8852541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0578 392 637 Expansin Gene Family AT1G12560 65.854 5.53e-118 350