Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0550 ATGCCTAATATCCAGAGTAAGAAGTTGCTAGGGTTTAGTAAGCGTTCTGTCATCTCTACTGAGAAGAGCATTTCCAACCAGGGTTTGAAGGTCGCTTATCTCACAGAAGATGGGGCGTATGCACAGCCGTGGGTTCGTACAGTTCTATTTTCTCCATCAATTTCCTCAGTTTTACGTAAAGGTATCTCAGCTTCGGCGTTGCCCTATAAGAGAACGCCGCATAGCTGGCTCAAGATCTCTGCGCAAGATGTTGAAGATAATATCTTCAAATTCGCCAAGAAGGGTTTGACTCCGTCGCAGATTGGTGTCATTCTCCGAGATTCTCACGGTATTGCGCAGGTCAAGAGTGTCACTGGCAACAAAATCTTGCGCATTCTCAAAGCCCATGGACTTGCTCCAGAAATTCCCGAGGATCTTTATCATTTGATCAAGAAGGCAGTTTCTATTCGTAAGCATCTCGAGAGAAACAGGAAGGACAAGGATTCCAAGTTCAGGTTAATTCTGGTTGAAAGCAGAATTCACCGACTTGCTCGCTATTACAAGAAAACTAAGAAGCTCCCACCAGTATGGAAATATGAATCAACAACCGCCAGCACTCTGGTTGCTTAG 609 0.4483 MPNIQSKKLLGFSKRSVISTEKSISNQGLKVAYLTEDGAYAQPWVRTVLFSPSISSVLRKGISASALPYKRTPHSWLKISAQDVEDNIFKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0550 202 SMART Ribosomal_S13_N_2 59 111 IPR012606 GO:0003735|GO:0005840|GO:0006412
Alju12g0550 202 FunFam 40S ribosomal protein S13 134 202 - -
Alju12g0550 202 Gene3D - 134 202 - -
Alju12g0550 202 PANTHER RIBOSOMAL PROTEIN S15P/S13E 59 202 IPR023029 -
Alju12g0550 202 SMART Ribosomal_S15_2 121 200 IPR000589 GO:0003735|GO:0005840|GO:0006412
Alju12g0550 202 SUPERFAMILY S15/NS1 RNA-binding domain 117 193 IPR009068 -
Alju12g0550 202 FunFam 40S ribosomal protein S13 86 133 - -
Alju12g0550 202 ProSitePatterns Ribosomal protein S15 signature. 149 179 IPR000589 GO:0003735|GO:0005840|GO:0006412
Alju12g0550 202 Pfam Ribosomal S13/S15 N-terminal domain 59 111 IPR012606 GO:0003735|GO:0005840|GO:0006412
Alju12g0550 202 Hamap 30S ribosomal protein S15 [rpsO]. 53 200 IPR023029 -
Alju12g0550 202 Pfam Ribosomal protein S15 125 195 IPR000589 GO:0003735|GO:0005840|GO:0006412
Alju12g0550 202 CDD Ribosomal_S15p_S13e 121 194 IPR000589 GO:0003735|GO:0005840|GO:0006412
Alju12g0550 202 Gene3D - 86 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0550 Alju-ChrAlju12 8230226 8232102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0550 60 202 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 90.909 1.02e-91 263