Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0536 ATGGGGAGACAACCTTGCTGTGACAAACTTGAAGTGAAGAAAGGACCATGGACTGCTGAAGAAGACAAGAAGCTCATCAACTTCATTCTCACTAATGGTCAATGTTGCTGGCGAGCCGTCCCGAAGCTCGCCGGCCTCAGACGATGTGGCAAGAGTTGTAGGCTTCGTTGGACTAACTATCTTCGTCCCGACTTGAAGAGAGGCCTACTCAGTGATGCAGAAGAGAACCTGGTCATTGATCTCCATTCTCGCCTTGGCAACAGGTGGTCTATGATAGCTGCAAAATTACCCGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACCCACATCAAGAAGAAGCTGGTTAAGATGGGTATTGATCCTGTAACTCACAAGCTTCTCAAGAAAGAAGAAGCTGCTTCCCAGGATAATTTACCTTCTGCAGAGCATTTGTCACAATCTGACAGTGACCATAACCAGGTGAATGTTCTCAACTCAAATGAGAATTCAATCTCATCACCAACTGAAAATTCATGTGGGGATGAACCGCTTTTGCAAGAAACTGATCGTCACAGCGACCTTCTCTCGAACAACTCGTGGCCGGAGGAAACTTCAATACCGGTGGATGCATTATGGGAAAGCATACCTGATGCACAGAACGCAAATTATGACTGGGCACTGTCATCTTGGGAGGATAGTATTTCCTGGTTCTTGGACTCTCAGGACTTTGGTTTTAATTGTTTCAATGAGATTGAGCCTCATGCCCTCCAGATTTCAGGAATGGAGGAGAAGGAACACTGGCTTGGGAGATAA 798 0.4561 MGRQPCCDKLEVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLSDAEENLVIDLHSRLGNRWSMIAAKLPGRTDNEIKNHWNTHIKKKLVKMGIDPVTHKLLKKEEAASQDNLPSAEHLSQSDSDHNQVNVLNSNENSISSPTENSCGDEPLLQETDRHSDLLSNNSWPEETSIPVDALWESIPDAQNANYDWALSSWEDSISWFLDSQDFGFNCFNEIEPHALQISGMEEKEHWLGR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0536 265 Gene3D - 70 152 - -
Alju12g0536 265 CDD SANT 16 61 IPR001005 -
Alju12g0536 265 FunFam MYB transcription factor 11 67 - -
Alju12g0536 265 MobiDBLite consensus disorder prediction 140 177 - -
Alju12g0536 265 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju12g0536 265 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Alju12g0536 265 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Alju12g0536 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju12g0536 265 Gene3D - 11 67 - -
Alju12g0536 265 PANTHER F14D16.11-RELATED 1 180 - -
Alju12g0536 265 SMART sant 13 63 IPR001005 -
Alju12g0536 265 SMART sant 66 114 IPR001005 -
Alju12g0536 265 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju12g0536 265 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju12g0536 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju12g0536 265 FunFam transcription factor MYB80 69 129 - -
Alju12g0536 265 CDD SANT 71 112 IPR001005 -
Alju12g0536 265 MobiDBLite consensus disorder prediction 134 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0536 Alju-ChrAlju12 7515454 7516367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0536 1 252 MYB Transcription Factor Family AT4G12350 53.357 1.87e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju12g0536 Myb_DNA-binding 2.7e-13 CL0123