Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0495 ATGGTGAAGATAGCTGTGGGTAGCTTCAGTGACTCTTTCAGTACTGCTTCCATTAAGGCTTATGTAGCAGAGTTCATTGCCACTTTGCTTTTCGTCTTCGCCGGTGTCGGATCGGCCATAGCTTACGGTGCCCTTACAAAGGATGCAGCGTTGGATCCGGCGGGGCTTGTGGCGGTGGCGGTGGCGCATGCATTTGCACTGTTTGTCGGAGTATCGGTGGCGGCCAACATATCCGGTGGCCATTTGAATCCAGCTGTGACATTTGGATTGGTCATTGGAGGCAATATCACCGTCCTAACTGCTATCTTCTACTGGGTTTCCCAACTGTTGGGATCTTTGGTCGCTTGCCTCCTCCTCAAATTTGTCACCAGTGCCCCGACCGTACCAGTGCATGGACTTGCCTTAGGAGTGGGTGTTGGTCAAGGCATAGTTTTTGAAATTGTTGCCACTTTTGGACTCGTTTACACTGTGTATGCCACAGCAGCTGACCCCAAAAAGGGCTCATTGGGCACTATTGCACCCATCGCAATTGGTTTCATTGTGGGTGCCAACATCTTGGCCGCCGGCCCATTCAGCGGTGGCTCAATGAACCCGGCCCGTTCGTTCGGCCCAGCTGTTGTATCCGGCAACTTCACCAACTACTGGATCTACTGGGTCGGCCCATTGATCGGCGGCGGTTTGGCCGGCTCCATCTACGGCAGCGTCTTCATTGGCTCATACGAGCCAGTTCCTACCTCTGAAAACTACCCTTGA 753 0.5325 MVKIAVGSFSDSFSTASIKAYVAEFIATLLFVFAGVGSAIAYGALTKDAALDPAGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLVIGGNITVLTAIFYWVSQLLGSLVACLLLKFVTSAPTVPVHGLALGVGVGQGIVFEIVATFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFTNYWIYWVGPLIGGGLAGSIYGSVFIGSYEPVPTSENYP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0495 250 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju12g0495 250 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju12g0495 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju12g0495 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju12g0495 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju12g0495 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju12g0495 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju12g0495 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju12g0495 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju12g0495 250 FunFam Probable aquaporin TIP1-1 2 248 - -
Alju12g0495 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Alju12g0495 250 SUPERFAMILY Aquaporin-like 15 243 IPR023271 -
Alju12g0495 250 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Alju12g0495 250 PANTHER AQUAPORIN-8 4 239 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0495 Alju-ChrAlju12 6389357 6390945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0495 1 247 Major Intrinsic Protein MIP AT5G47450 77.328 2.75e-135 379