Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0489 ATGGAGGAGAAGCACAAATGCAAACTCTGTTCCAGAACCTTCGCTCATGGCAGATCACTCGGCGGCCACATGAAGGCCCATTTCGCCACCCTCCCTCTTCCACCCAAGCCTCAACCACCGCCGCCGCCACCACCATCGCCGCCGTCACCTTCATTCTCATCTTCTTCCTCACAAGATTCCGACGAGAAAGCTCTGATTTATACTCTCAGGGAAAATCCCAAGAAAAGTTTCAAGCTTGGAGATCCTGAATTCTCCGTCGTCGATACCACCAGCTCTGTTATTGTTCAGGACCGAGAAAGCGAGACCGAGTCAAAGAACCCAACTCGCCTTCGATCCAAGCGAGCCAGAACTCAGAGATTTACACTACCCAAGAAGCCTAAACCGAGTCTCTCCGAGTCACCACCGGCGAGCTCAGTTTCTGAAACCAGCACTGAAGAAGATGTTGCTATGTGTCTCATTATGCTCTCCAGAGACAAATGGAAGAGAATCACTGTAAAGAAAGAAGAAGAAGAAGATCGTGGAGGAGACGAGAAATTGAAGCGATTCGAGGAGATCAAGGTGAAGAAAGGAGTTCGCGGGAAGCACCAGTGTGAGAAATGCAGAAAAACGTTTCGATCGTTTCGAGCATTAGGGAGTCATAGAAACGTTTGTTTTCGCGATGAAGAAGAAGCTAGAAACGCCGGCAATAACAACAGCACTAATCCGATTTTCGAATGCCCGTTTTGTTATAAGGTGTTCGGGTCGGGTCAAGCACTTGGTGGGCACAAGAGATCTCATTTGATTCAATCTTCATCATCAACCTTGAACCATTCTGCAACATTAATAATCAAAGAAAGCTTCATAGATCTCAACTTGCCAGCTCCATTAGCAGCAGCAGCAGAAGATGAACTCAGTGTGGTTTCTGATGCATAA 912 0.4737 MEEKHKCKLCSRTFAHGRSLGGHMKAHFATLPLPPKPQPPPPPPPSPPSPSFSSSSSQDSDEKALIYTLRENPKKSFKLGDPEFSVVDTTSSVIVQDRESETESKNPTRLRSKRARTQRFTLPKKPKPSLSESPPASSVSETSTEEDVAMCLIMLSRDKWKRITVKKEEEEDRGGDEKLKRFEEIKVKKGVRGKHQCEKCRKTFRSFRALGSHRNVCFRDEEEARNAGNNNSTNPIFECPFCYKVFGSGQALGGHKRSHLIQSSSSTLNHSATLIIKESFIDLNLPAPLAAAAEDELSVVSDA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0489 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Alju12g0489 303 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Alju12g0489 303 SMART c2h2final6 195 215 IPR013087 -
Alju12g0489 303 SMART c2h2final6 237 259 IPR013087 -
Alju12g0489 303 SMART c2h2final6 5 27 IPR013087 -
Alju12g0489 303 MobiDBLite consensus disorder prediction 88 145 - -
Alju12g0489 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Alju12g0489 303 Gene3D Classic Zinc Finger 192 259 - -
Alju12g0489 303 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 303 IPR044303 GO:0006355
Alju12g0489 303 SUPERFAMILY beta-beta-alpha zinc fingers 195 259 IPR036236 -
Alju12g0489 303 MobiDBLite consensus disorder prediction 131 145 - -
Alju12g0489 303 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Alju12g0489 303 Pfam C2H2-type zinc finger 237 261 - -
Alju12g0489 303 Pfam C2H2-type zinc finger 195 214 - -
Alju12g0489 303 Pfam C2H2-type zinc finger 5 27 - -
Alju12g0489 303 MobiDBLite consensus disorder prediction 32 51 - -
Alju12g0489 303 MobiDBLite consensus disorder prediction 21 65 - -
Alju12g0489 303 SUPERFAMILY beta-beta-alpha zinc fingers 2 30 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0489 Alju-ChrAlju12 6234448 6235359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0489 3 300 C2H2 Transcription Factor Family AT3G60580 37.267 3.05e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju12g0489 zf-C2H2_6 7.8e-11 CL0361