Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0484 ATGCTATACGGACTCACCTTAATGGCTTCTCTTTTGCCTCTCTTGTTCATCTTTTTGCAACTTCTCTTGGTTTACACTTCCTTGTTGCATGCACTATCTGCAACACCCACCGGTCATCGCGTAATCACCGTCGACGTCAATGGAAGCGGTGGGAGTTTCCGGTCAGTGCAAGCTGCCGTGGATGCTGTCCCAGACAACAATAGAATGAATGTAGTTATTCAAATCAGCGCAGGATACTACATAGAGAAAGTGGTGGTGCCGGTGGCGAAGCCGTACATTACGTTTCAGGGAGAGGGGAGGGACAAGACGGTGATTGAATGGCATGATAGAGCCGGTGACGTTGGCCCCAATGGACAACAATTACGAACTTACAGAACTGCGTCTGTCACAGTTTTCGCCAGCTTTTTCTCTGCTAGGAACATCAGCTTCAAGAACACGGCGCCGGCGCCGATGCCGGGAATGGAAGGGTGGCAAGCGGCGTCGTTTAGGATTTCTGGGGACAAAGCGTATATGTTGGGATGTGGGTTTTACGGGGCACAAGACACTCTTTGTGACGACGCTGGACGACATTACTTCAAGGATTGTTACATCGAAGGCTCCATTGATTTCATCTTTGGCAATGGCAGGTCTATCTACAAGGACTGTGAGCTGCACTCGATAGCGACGAGGTTTGGGTCAATAGCAGCCCAAGATCGAAGGAGCCCAAGTGAGAAGACAGGTTTTGCATTTATAGGTTGTAGGGTGACGGGTTCTGGGCCCATATACTTGGGCCGAGCAATGGGCCCATATTCAAGAATTGTCTACGCTTATACCTATTTCGAAGACATTGTTGCGCATGCTGGCTGGGATAATTGGAATCGCGACCAAGGCAAAAACAAGACAATATTCTTCGGAGTGTACAAGTGCTGGGGCCCAGGAGCCACGTCATTGCGGGGGATCTCATGGGCCCCAGAGCTAGATTTCAAGTTGGCACATCCATTTTTAGCCAAGAGCTTCGTCAATGGAAGACATTGGTTACCTTCTTTTGGTGCTTAG 1035 0.4947 MLYGLTLMASLLPLLFIFLQLLLVYTSLLHALSATPTGHRVITVDVNGSGGSFRSVQAAVDAVPDNNRMNVVIQISAGYYIEKVVVPVAKPYITFQGEGRDKTVIEWHDRAGDVGPNGQQLRTYRTASVTVFASFFSARNISFKNTAPAPMPGMEGWQAASFRISGDKAYMLGCGFYGAQDTLCDDAGRHYFKDCYIEGSIDFIFGNGRSIYKDCELHSIATRFGSIAAQDRRSPSEKTGFAFIGCRVTGSGPIYLGRAMGPYSRIVYAYTYFEDIVAHAGWDNWNRDQGKNKTIFFGVYKCWGPGATSLRGISWAPELDFKLAHPFLAKSFVNGRHWLPSFGA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0484 344 Gene3D - 37 344 IPR012334 -
Alju12g0484 344 ProSitePatterns Pectinesterase signature 2. 197 206 IPR033131 -
Alju12g0484 344 Pfam Pectinesterase 43 335 IPR000070 GO:0030599|GO:0042545
Alju12g0484 344 SUPERFAMILY Pectin lyase-like 37 343 IPR011050 -
Alju12g0484 344 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 33 339 - -
Alju12g0484 344 FunFam Pectinesterase 37 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0484 Alju-ChrAlju12 6191925 6194210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0484 5 339 Carbohydrate Esterase AT5G47500 66.097 2.54e-177 494