Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0473 ATGGCACCAAAAAGCCAGACTGAGGCACCCATTAGGAAATTCATTAACCGAGGAGCTTGGACTCCCGAGGAAGATCGAAAGCTTTCTCAATGCATTGAACTTCATGGAGCTAAGAGGTGGAAGACTATTGCTCTTAAATCAGGTTTAAACAGATGTGGCAAGAGTTGCAGGCTGAGATGGCTCAACTATCTGAGACCAAACATCAAGAGAGGCAACATTTCACTTGAAGAAGAAGATTTGATTCTTAGGCTTCACAAACTCCTCGGAAATAGGTGGTCCTTAATAGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAAAACTATTGGAATTCTCATTTGTGCAAAAAAGTCAATAATCTTGAAGAGAAGAAAAAGAACCCAAACACTAGTTCAACAACCCCACAAGAAAACACACCCCAAAATACTTTGGATAGTGTCATTGTGGAGAATGAGGAAGCCATTAATGGAAATGAAACAACTTTGAATTCGGAAGTTAGCTTTGATGTGAATGAATTCCTTGACTTCTCTGCCAAAGAAGGATCTTTTCATGAGTTGGATTGGGTAAACAAGTATCTAAAACTAGATGAGTTTCCAGGGAGCAATGGGTTATTTTGA 621 0.3994 MAPKSQTEAPIRKFINRGAWTPEEDRKLSQCIELHGAKRWKTIALKSGLNRCGKSCRLRWLNYLRPNIKRGNISLEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNNLEEKKKNPNTSSTTPQENTPQNTLDSVIVENEEAINGNETTLNSEVSFDVNEFLDFSAKEGSFHELDWVNKYLKLDEFPGSNGLF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0473 206 CDD SANT 74 115 IPR001005 -
Alju12g0473 206 FunFam MYB-related transcription factor 16 69 - -
Alju12g0473 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Alju12g0473 206 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Alju12g0473 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Alju12g0473 206 Gene3D - 17 69 - -
Alju12g0473 206 MobiDBLite consensus disorder prediction 122 144 - -
Alju12g0473 206 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Alju12g0473 206 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Alju12g0473 206 CDD SANT 19 64 IPR001005 -
Alju12g0473 206 SMART sant 16 66 IPR001005 -
Alju12g0473 206 SMART sant 69 117 IPR001005 -
Alju12g0473 206 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Alju12g0473 206 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Alju12g0473 206 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 14 153 - -
Alju12g0473 206 MobiDBLite consensus disorder prediction 126 144 - -
Alju12g0473 206 Gene3D - 73 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0473 Alju-ChrAlju12 6041795 6043372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0473 12 121 MYB Transcription Factor Family AT5G52600 66.364 1.50e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju12g0473 Myb_DNA-binding 2.4e-17 CL0123