Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0467 ATGGAAACAGAACAACAAGAACCAGAAGCTCTCCTTCACACTCAACTTCAATTAACCATTGCCTCTTCTTCTTCTTCTTCCTCCTCCGGCACCACAGAAGCCATTGATGTACACCATGAAGCTCATAACAAAGAAGAGAGTGTGAAGAGGAAGAAGACGATGAAGAAGAACACAAACATGGTGGACGAGAAGCACCCAACGTACAGAGGCGTACGTATGTGTCAATGGGGGAAATGGGTTTCAGAAATCAGGGAACCCAGAAAGCAATCCAGAATATGGCTCAGCACTTTTCCCACGACGGAAATGGCTGCTCGAGCTCACGACGTTGCTGCTCTCACCATTAAAGACGCCTCTGCTTTCCTCAACTTCCCAGAGCTAGCCGCCGTGCTTCCTCATCCGGTCAGTAACTCCCCAAAGGACGTCCAAGCCGCCGCCAATTACCACATCAACCGTCAAAGACGACCCGAACCTGGGTCTGAGGTCTTGCCAGCGGACACTCCAACATTTTCAAGTTCGACGTCAACGGACGATGATGACACCTTTTTCAACCTCCCCGATATCTTAAATCACAGCGGCACCGGTGAGTTTCATTACTCCTCGCTGCGGCTTACAGCGGGCGCCGATTACAAAGACTTCGGTTTCCGGCTCGAAGAGCCATTTCTATGGGACTCTTGTTAA 678 0.5015 METEQQEPEALLHTQLQLTIASSSSSSSSGTTEAIDVHHEAHNKEESVKRKKTMKKNTNMVDEKHPTYRGVRMCQWGKWVSEIREPRKQSRIWLSTFPTTEMAARAHDVAALTIKDASAFLNFPELAAVLPHPVSNSPKDVQAAANYHINRQRRPEPGSEVLPADTPTFSSSTSTDDDDTFFNLPDILNHSGTGEFHYSSLRLTAGADYKDFGFRLEEPFLWDSC 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0467 225 SUPERFAMILY DNA-binding domain 67 125 IPR016177 GO:0003677
Alju12g0467 225 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Alju12g0467 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 44 191 - -
Alju12g0467 225 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Alju12g0467 225 MobiDBLite consensus disorder prediction 35 55 - -
Alju12g0467 225 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Alju12g0467 225 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Alju12g0467 225 MobiDBLite consensus disorder prediction 20 55 - -
Alju12g0467 225 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Alju12g0467 225 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Alju12g0467 225 Pfam AP2 domain 66 114 IPR001471 GO:0003700|GO:0006355
Alju12g0467 225 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Alju12g0467 225 MobiDBLite consensus disorder prediction 20 34 - -
Alju12g0467 225 MobiDBLite consensus disorder prediction 151 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0467 Alju-ChrAlju12 5876451 5877128 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0467 55 221 AP2-EREBP Transcription Factor Family AT2G44940 45.455 8.81e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju12g0467 AP2 1.6e-11 CL0081