Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0442 ATGGCAAACCCTGTTGAACTTTCAGCCCTCAATCGTATAAAATTGCATCTTCTAGGTGAACTGTCTCCTGTTGGCACTTTCTCCAGTGGCCTTAGCAGTTCATCGAGCGATGCGAACCAACAATTCTGGTTTGGTGAATCAAGCGGATCAATTTCCAGTTCTGATTCTGACACTCGTTGTACTCAATCATCGAGTTCTGATTCTTCCATCACTGTGTCTGATTACCTCCCTGAACTTTTCGAACTCCCAACCAAATCCACTAATCTATCTGAGTTCGAGTTCAAGAATCAAGTGATTGACCTCTCAACGCCCAAATTCGAAACCGAAACTTCACAATTTGACGCCAATTTTTCCCAATTTGAAGCAAACTCACAGGCAACATCAAGCTCTGGCTCACAGTCCAGCAGTTGCATGTTCGAGTTTCAAACTATACCCCAGAGCGTCGAGAAGAAATCTCATATGAATCGGAAACCGTCGTTGCAAATTACGCTACCCAAAAAAACCGAGTGGATCCAATTTGGAAACCCTGATCAACAACACGAGGAGGTTTCAGATATGTTCGTGCAGAATAATTCAAAACTTGAAGAGAAAAGGCATTACAGAGGCGTTCGACAGAGACCGTGGGGCAAGTTCGCCTCCGAGATTCGGGATCCAAACAAACGTGGATCTAGGGTTTGGCTCGGAACGTTCGACACGGCGATCGAAGCAGCAAAAGCGTATGATCGAGCTGCGTTTAAGCTTCGAGGCTCCAAAGCTATACTCAATTTTCCTCTGGAAGCAGGGAACTCCTGTTCGACGGAGCGCACGGAGGAGAAAAAACGCCGGCGGGAAGATGATGCGGTGGAGGCGGAAATGGATGTGAAACCAGTGGTGAAGAAAGAGAAAACGGAAGAATCTGATGTGGGAAGGATAAGGGATATGCCGCTAACGCCGTCAATATGGACGGGGTTCTTGGAGACTGATTTGAAGGACATTTTCACAGTACCGCCGTTATCACCGCTGTCTCCTCACCCGCCAATGGGCTTTCCTCAGCTAATGGTTGTATGA 1047 0.4699 MANPVELSALNRIKLHLLGELSPVGTFSSGLSSSSSDANQQFWFGESSGSISSSDSDTRCTQSSSSDSSITVSDYLPELFELPTKSTNLSEFEFKNQVIDLSTPKFETETSQFDANFSQFEANSQATSSSGSQSSSCMFEFQTIPQSVEKKSHMNRKPSLQITLPKKTEWIQFGNPDQQHEEVSDMFVQNNSKLEEKRHYRGVRQRPWGKFASEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEAGNSCSTERTEEKKRRREDDAVEAEMDVKPVVKKEKTEESDVGRIRDMPLTPSIWTGFLETDLKDIFTVPPLSPLSPHPPMGFPQLMVV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0442 348 CDD AP2 199 257 IPR001471 GO:0003700|GO:0006355
Alju12g0442 348 PRINTS Ethylene responsive element binding protein signature 239 259 IPR001471 GO:0003700|GO:0006355
Alju12g0442 348 PRINTS Ethylene responsive element binding protein signature 200 211 IPR001471 GO:0003700|GO:0006355
Alju12g0442 348 MobiDBLite consensus disorder prediction 265 283 - -
Alju12g0442 348 FunFam Ethylene-responsive transcription factor 2 198 259 - -
Alju12g0442 348 SUPERFAMILY DNA-binding domain 199 258 IPR016177 GO:0003677
Alju12g0442 348 PANTHER DNA-BINDING DOMAIN 134 275 IPR044808 GO:0003700|GO:0009873
Alju12g0442 348 Pfam AP2 domain 199 249 IPR001471 GO:0003700|GO:0006355
Alju12g0442 348 ProSiteProfiles AP2/ERF domain profile. 199 257 IPR001471 GO:0003700|GO:0006355
Alju12g0442 348 MobiDBLite consensus disorder prediction 47 70 - -
Alju12g0442 348 Gene3D AP2/ERF domain 198 259 IPR036955 GO:0003700|GO:0006355
Alju12g0442 348 MobiDBLite consensus disorder prediction 263 283 - -
Alju12g0442 348 SMART rav1_2 199 263 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0442 Alju-ChrAlju12 5401739 5402785 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0442 1 348 AP2-EREBP Transcription Factor Family AT5G47230 44.886 3.61e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju12g0442 AP2 3.1e-15 CL0081