Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0439 ATGGCCCACTCACTTAGGCAAAGAAAGCAAAGCACTAATTATGCAGATTCAGGCAGTCCTGGAAGTGATTCAATTGGTTCTGATGCAGACTACTTATCAAGGACCTGTAATAGACGAAAAAAGAGAAGGAACTTGACATTATGCTCTACAACTACAAAGGAGACTAAAACAGCAAACTCAAGTGTAAATTTGACTGCAAGGCATCGACGAGGTCATACCTCAAAGAAGAGGGTTCAGGAAGTGCAAAACAAGGAAGCCAGTGATCCTACAAGTTCAAACAAGAAAGATGGAACATTGTGTGCTGACCAATTAAGTTCAAACAAAACAACCATTTTATCATGGTTGATAGATTGCAATGTTATCAAGGAGGGTGAGCATGTCACCTACTCAAATGAAATAAAGGGTAACCCTGCTAAGATAGGAAAAATTGCCAGAGGTGCAATTCTCTGCAGCTGTTGCCAGAGGGAATATTCTGTGTGGGGCTTTGAGAAACATTGTGAAAGTGATCTTAAACAACCCTATCAATATATTCACCTCCTTGAAAAACGAGCATCTCTTCTGGAGTTTATAAAGATTGCTTGGCAGGAGAACAGTGAACTGAAACACCTGGAAGCACACTCCTCTAAACGCACAAGAAATTCAAAAGACAACCATGATTATGCTTGTCCTGTTTGTGGAGATGGGGGAGACTTGATCTGCTGTGACAAGTGCCTCGCCACATATCATCTGGACTGTTTGAATTTGGAGAGGCTTCCTGATGGTGATTGGTTCTGTCCTTATTGCGTATGCAAACATTGTGGGTTTGGTGATAAAAGCAAGCAATTGATTGCATGTTTCCAATGTAACAAAAAATTTGAATGGGGATGCTTTAAGGAATTTGAGAAAGATGCTCTTAAAGATGCCTTAGACCCTGACTGTTCGCGTTTATATTGTAGGCAAAGTTGTAGAAAGGCCTATGAGATATTGGAGGGTTTTGTTGGAGTCAGGAACGAAATCACTGGAAGCTACACTTGGAGAGTTATTCGTCAAATGGATAGGACATCCACTGTCTCTAAACACCAATATTTTGAAAATAATGTCAAGGTTGCAATTACGTGGAAATTAATGAATGAAGCTTTTGTGCCAATAGTTGACAGATACTCTGGCCACAATGTGGTTCAAAGTGTACTATATAGTCTTGGGTCAGAATTACCCAGGATTGATTATAGCCGTTTCTATACATTTATACTGGAAAAAGATGATGAGGTTGTCTCTGCTGCTTCTGTGAGGGTCCATGGGCAGGGGCTTGCAGAAATGCCCTTTATGGCCACACACAAAAATTATCAAAGAAAAGGATACTGCGGATACCTTTTGGCCATTGTGGAATCGGTCCTTCGCCGTCTCTCAGTTCAAAGCTTAATAATCCCGGCAATTCCAGAGCGCGCCAGCATGTGGAGGGATAGGTTTGGATTTAGTGATCTGACTACAGAGATGAAAAGAGAACTAGCCTCCTTCAACATTTTGATGTTTTTGGAATCTCTATTACTGGTCAAGGACTTAAAAAGGCAGACAGCAGAATCTGGTCAATACTTTGTCCTTCTCTCTCCCCTGCATGAAATTCCACTCCCTTAA 1611 0.4115 MAHSLRQRKQSTNYADSGSPGSDSIGSDADYLSRTCNRRKKRRNLTLCSTTTKETKTANSSVNLTARHRRGHTSKKRVQEVQNKEASDPTSSNKKDGTLCADQLSSNKTTILSWLIDCNVIKEGEHVTYSNEIKGNPAKIGKIARGAILCSCCQREYSVWGFEKHCESDLKQPYQYIHLLEKRASLLEFIKIAWQENSELKHLEAHSSKRTRNSKDNHDYACPVCGDGGDLICCDKCLATYHLDCLNLERLPDGDWFCPYCVCKHCGFGDKSKQLIACFQCNKKFEWGCFKEFEKDALKDALDPDCSRLYCRQSCRKAYEILEGFVGVRNEITGSYTWRVIRQMDRTSTVSKHQYFENNVKVAITWKLMNEAFVPIVDRYSGHNVVQSVLYSLGSELPRIDYSRFYTFILEKDDEVVSAASVRVHGQGLAEMPFMATHKNYQRKGYCGYLLAIVESVLRRLSVQSLIIPAIPERASMWRDRFGFSDLTTEMKRELASFNILMFLESLLLVKDLKRQTAESGQYFVLLSPLHEIPLP 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0439 536 SMART PHD_3 221 262 IPR001965 -
Alju12g0439 536 ProSiteProfiles Zinc finger PHD-type profile. 219 264 IPR019787 -
Alju12g0439 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 301 IPR013083 -
Alju12g0439 536 CDD NAT_SF 408 468 - -
Alju12g0439 536 Pfam PHD-finger 222 263 IPR019787 -
Alju12g0439 536 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 368 489 IPR016181 -
Alju12g0439 536 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 364 514 IPR000182 GO:0016747
Alju12g0439 536 PANTHER PHD FINGER PROTEIN 12 59 517 IPR042163 GO:0003714|GO:0045892
Alju12g0439 536 MobiDBLite consensus disorder prediction 1 31 - -
Alju12g0439 536 MobiDBLite consensus disorder prediction 1 97 - -
Alju12g0439 536 Gene3D - 371 501 - -
Alju12g0439 536 Pfam Tify domain binding domain 141 188 IPR032308 -
Alju12g0439 536 CDD PHD2_CHD_II 222 261 - -
Alju12g0439 536 SUPERFAMILY FYVE/PHD zinc finger 201 263 IPR011011 -
Alju12g0439 536 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0439 Alju-ChrAlju12 5358825 5362218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0439 90 513 PHD Transcription Factor Family AT1G05380 38.710 1.12e-92 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju12g0439 TDBD 1.1e-10 No_clan