Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0427 ATGGTTAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGACCGCCAGAGAAGCCAGTGCTATGCAATGCATGTGGATCTCGATGGAGAACAAAGGGAACCCTAGCAAATTATACCCCTTTACATGCTCGGACAGAAACCGATGATTATGAGGATCCAAGGCCCTCTAGGGCAAAGAACATAACATTAAACAAGAACAAAGAAGTGAAATTACTCAAAAGAAGGCTGAACCATGATACTTTTGTATCTTGTTGGGTTGCCCCTGATTACAACCAAGGATCTCTAAGGGTTATAGATGAAGATGCAAGCAATAGATCAAGTTCAGGATCAGCTGTCTCTAACTCAGAGAGCTGTGCTCAATTAGCTGGAACAGATGCTAGTGACCTGACAGGTCCTGCTCAGTCAGTAGTGGGAGGTGGTATGGTGCCCTCAAGAAAGAGAACCTGTGTGAACCGTCAAAAGCCATCTTCTGTTGAGAAGCTCACAAAAGATTTATATACTATCCTTCATGAACAGCAGTCCTATTTCTCTGCATCTTCTGAAGAGGATCTAATTTTTGACAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCTAGCTCTATAGCCCGTGAAGAAGAATCTGAGGCTAGCTCCTTTTCAGTTGATAACAAACAATGCCCAACGAGTGAGGCATATTCATGCTCTGGTGTTGTTGATATGCATAATGATTTCACTGGCATGAACTTTTCATCTCATGGAGTTGAAAATATCAACTACTCTGCTAGCCAAGGAATTCAGCGGGAGAAACTTAGAAGGGAGCCTGAAACTTCAGAAATCCTTGGATGTCATGATTTGCCATTGTGCCTGATGGATTTAATTGATGTTGTAAACTATGAGGTGTTCTTGACGAACTTGACAAATGAGGAGCAGCAAAAATTACTGAAGTGTCTTTCTGCCGTTGATACTGCTAAACTTCCGGACAGCCTTAAAAGCATGTTCAACAGCTCTCAGTTCAGAAAGAACGTAACTTACTTTCAACAGCTTCTTGGGGAAGGTGTCTTTGATACCTCTTCATCAGGGGCAAACGCTGGAGACTGCCATGCTTTGAAACGGCTTGCATTATGTGATTTTTCACAGTCAAAATGGGTGGAACAATATGATATACTTAAGAGATGTAAATATGGAGATGAAAAATCTGTTGCTCTTGGACGTACTGGCTCTGCATCCAGTAATGCTGCAAACGAGAAGAGATTGTGTGATAGCTCAAATAAAAGTTTTCCTGAACTGAAGTCAATAGTTAGGAGCCCCAAAAGGATGGTGATGATGAAGGCTGGTAGTGAGGGCAAGGAAGTCTTTGAAGATGGCTCTTGCTTCAGTCCAAATGGCTTATTGGCTTTGCCCTCTGATGACAGCCCACATATGCTGGATTCTTTCAACTTTGTTGACGAAAGTTCCGATCAAGATCTTCTGCTCGAAGTGCGATCTAACAGTTATTTCCCGGAAGCAGAACTGCTGCATCCAGCCTTAAGATTTGGTACTCAGCCGGGCACTAGCAGTAGCTATGGCTATTACTGA 1602 0.4313 MVKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDYEDPRPSRAKNITLNKNKEVKLLKRRLNHDTFVSCWVAPDYNQGSLRVIDEDASNRSSSGSAVSNSESCAQLAGTDASDLTGPAQSVVGGGMVPSRKRTCVNRQKPSSVEKLTKDLYTILHEQQSYFSASSEEDLIFDSETPMVSVEIGHGSVLIRHPSSIAREEESEASSFSVDNKQCPTSEAYSCSGVVDMHNDFTGMNFSSHGVENINYSASQGIQREKLRREPETSEILGCHDLPLCLMDLIDVVNYEVFLTNLTNEEQQKLLKCLSAVDTAKLPDSLKSMFNSSQFRKNVTYFQQLLGEGVFDTSSSGANAGDCHALKRLALCDFSQSKWVEQYDILKRCKYGDEKSVALGRTGSASSNAANEKRLCDSSNKSFPELKSIVRSPKRMVMMKAGSEGKEVFEDGSCFSPNGLLALPSDDSPHMLDSFNFVDESSDQDLLLEVRSNSYFPEAELLHPALRFGTQPGTSSSYGYY 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0427 533 Gene3D - 3 81 IPR013088 GO:0006355|GO:0008270
Alju12g0427 533 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Alju12g0427 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 45 - -
Alju12g0427 533 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Alju12g0427 533 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Alju12g0427 533 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Alju12g0427 533 MobiDBLite consensus disorder prediction 131 161 - -
Alju12g0427 533 CDD ZnF_GATA 6 64 IPR000679 GO:0006355|GO:0043565
Alju12g0427 533 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 292 401 IPR044867 -
Alju12g0427 533 PANTHER OSJNBB0038F03.10 PROTEIN 7 517 IPR044589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0427 Alju-ChrAlju12 5178071 5183078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0427 1 515 C2C2-Gata Transcription Factor Family AT4G17570 49.049 6.86e-139 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju12g0427 ASXH 5.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1857 09 42350751 42356468 Alju12g0427 12 5178071 5183078 CCT