Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0389 ATGATTTGCACTGCAAACGATATACAGGAGTGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGATGGAGACGACATTTCTGCTTCGGAGATAAGAACAAAGCTTGAGGCCATGGACTATATCGTTTCTACATTCTTTGATGAGAATGAAGCCTTGTCAGCAATCTCCAGCAAACCTGAAGGCTTTCATGTTGCCATAGTGGAGGTTAGTACGAACAGCCTGGGAAGTTTCAAAATTCTTGAGCATGCTAACGACTTGCCTATCATCATGGCTTCAAACAATCACTGCTTAAGCACCACGATGAAGTGTGTAGCGCTTGGTGCAGTTGAGTTCCTAAGTAAACCACTCTCTGAGGAAAAGCTCAGGAATATCTGGCAGCATGTTGTTCATAAGGCATTCAACACTGGGACAAGTGTTCTTCCTAAATCACTAGAACCTGTCAAAGAATCTGTGGTATTGCAGCTTCAAACAGACGAGGTAGAGCATGAAAGTGTAAACTTGGAGGAGTCTAGGTTCAGTGATGATGACCATGAGCAGTCTGCAGGAAGTGACAAGTACCCAGCTCCTTCAACTCCACAATTAAAACATGGGGCAAGGTTAATGGACCATGGAGATTGCCAAGAACAAACTAATTGTTCAACAGAAAAGGAAAGTGAGGACCATGATGGGGAATCTAAATTTGTCGAAACTACATGTGGGGTTTTGAATTCTGAAGGAACTTGTAAACCACTAAAACCTGAAAAGGCTATGAACATGGAGGATGAGAACCTTGCAAGTGATTCTAAGAGTGAGAAAGTTGTTTCTCAACCTGTACATGATAATGTTCTCAGCAACACTGAAGGTGATACTGTATCTCCAAATAAAGCAGGTGTTCATGGTGATTCCCGTCAAATCAAAACCAAGAAGAAGGTAGACTGGACCCCTCAGCTGCACAAGAAGTTCGTGAAGGCAGTGGAACAATTAGGGGTTGATCAAGCAATTCCTTCTCGGATACTGGAATTAATGAATGTGGAGGGCTTGACAAGGCATAATGTGGCAAGTCATCTTCAGAAATATAGAATGCATAGGAGGCAAATCTTGCCAAAGGAAGATCGAAGATGGGTACAAAGACCAGTTATGTCTTTCCCTACATATTATTCTAACTGCACCCCATCACCAGCTCCTGTGTATCCTATCTGGGGACAATCTGGCAGTCAACCAGCCAGTATGCATGCTTGGGGCCCACCTGGTTATCCACTGTGGCATCCTACTGAAAGTTGGCACTGGAAGCCATATCATAGGATACATGCAGATGCATGGGGTTGCCCAGTGTTGCCAGCTTCTCAGAGTCCTTGTATTTCGTACTCTCAAAATATACCTGAATGGCACAAAGCTAATTCTGTTAATTATAGCGGAAGCAAGTTACAGAATTCCTGTGAATATCATCCAGCAGAAGATGTTGTTGACAAGGCAGTGAAGGAGGCAATAAGCAAGCCATGGCTACCAATGCCTTTAGGCCTCAAACCTCCTTCCATTGATTGTGTGTTGTCAGAGCTCTCTAGGCAAGGCATTTCCACCATCCCTCCTTGCTCGAGGCATGCTAAACCAGAACCAGAATCCGAACCCGAACCCGAACCCCAGTGA 1629 0.442 MICTANDIQEWKDFPKGLRVLLLDGDDISASEIRTKLEAMDYIVSTFFDENEALSAISSKPEGFHVAIVEVSTNSLGSFKILEHANDLPIIMASNNHCLSTTMKCVALGAVEFLSKPLSEEKLRNIWQHVVHKAFNTGTSVLPKSLEPVKESVVLQLQTDEVEHESVNLEESRFSDDDHEQSAGSDKYPAPSTPQLKHGARLMDHGDCQEQTNCSTEKESEDHDGESKFVETTCGVLNSEGTCKPLKPEKAMNMEDENLASDSKSEKVVSQPVHDNVLSNTEGDTVSPNKAGVHGDSRQIKTKKKVDWTPQLHKKFVKAVEQLGVDQAIPSRILELMNVEGLTRHNVASHLQKYRMHRRQILPKEDRRWVQRPVMSFPTYYSNCTPSPAPVYPIWGQSGSQPASMHAWGPPGYPLWHPTESWHWKPYHRIHADAWGCPVLPASQSPCISYSQNIPEWHKANSVNYSGSKLQNSCEYHPAEDVVDKAVKEAISKPWLPMPLGLKPPSIDCVLSELSRQGISTIPPCSRHAKPEPESEPEPEPQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0389 542 MobiDBLite consensus disorder prediction 160 227 - -
Alju12g0389 542 FunFam Two-component response regulator-like APRR2 17 142 - -
Alju12g0389 542 MobiDBLite consensus disorder prediction 520 542 - -
Alju12g0389 542 SMART REC_2 18 127 IPR001789 GO:0000160
Alju12g0389 542 Pfam Myb-like DNA-binding domain 306 355 IPR001005 -
Alju12g0389 542 Gene3D - 300 361 - -
Alju12g0389 542 ProSiteProfiles Response regulatory domain profile. 19 131 IPR001789 GO:0000160
Alju12g0389 542 FunFam Two-component response regulator 299 362 - -
Alju12g0389 542 Gene3D - 18 139 - -
Alju12g0389 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 300 359 IPR017930 -
Alju12g0389 542 NCBIfam myb-like DNA-binding domain, SHAQKYF class 303 357 IPR006447 GO:0003677
Alju12g0389 542 MobiDBLite consensus disorder prediction 200 227 - -
Alju12g0389 542 MobiDBLite consensus disorder prediction 163 184 - -
Alju12g0389 542 SUPERFAMILY CheY-like 16 133 IPR011006 -
Alju12g0389 542 MobiDBLite consensus disorder prediction 277 302 - -
Alju12g0389 542 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Alju12g0389 542 SUPERFAMILY Homeodomain-like 301 359 IPR009057 -
Alju12g0389 542 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 525 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0389 Alju-ChrAlju12 4711885 4716241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0389 1 526 Response Regulator Gene Family AT4G18020 50.179 1.61e-140 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Alju12g0389 Response_reg 3e-07 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1917 09 43016935 43021406 Alju12g0389 12 4711885 4716241 CCT