Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0371 ATGGGTTGCACTGTAAGGGAAAAGCACCTCCGTGCGAATCGGAGGCCTCGATCACCCAAACCCGATATGGATTCATGTTGTTTTCTCGACAAGGCTTCTTTCTCCAAATCTTTACTGGAATCAAGCATGAAGCCTTTGAAAAACCATCTCGCTATCAACGATTCTTCACAAAATCTAAATCCCAACTCTAAGCATACCCTTAACCCTAATTTCTCCCTTAATGTTGAGGAAACCGGCTGGGGTTACTGCACAGAAGAACAATTAGAAGAAATTCTATTAAAAAACTTGGAATATCTATATAACGAAGCTGTATCAAAGCTTGTTGCGTTGGGATACGATGAGGACGTTGCTATCAAAGCAATACTGCGAAATGGGCACTGTTATGGTGGAATGGATGTGCTCTCCAATATATTACATAATTCGTTGGCTTATTTGAATAGCAATTGCAATAGTACTTGTACTAGTATTAATGGCAATTCGGATGGGTCCGATCCTGTTTTCTCTGACTTGAGGCAGTTAGAGGGGTACTCTCTGGAAGGTATGGTCGGTTTGCTCCGACAAGTCAGACCGCATTTGAGTAAAGGCGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTAGGACGGGCAAGTGCTATGGAAATTCCATTGCATCCTGCTCCAGGTAATGGTTGTCCACCTAATGCCTCTGAGGCTGTTAGCAATTCTGTTGGTGTTTTGGCCCCTACCCTGTGTAGGTTCCATGGGGGTTGGGGATTTGGAAATGGGGGAGGCTCAGATCTCCCCACCGATGGATTCTTCTCTTATAGTGCAGAGATGAATTTACAAAGAGATATTGAACTTCCTAAAAGGTTTAATCTTTCTCCTTCAATGAAGTCTTTATTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAATTCAAAACAATTGCAGACACAGGCTAAGGCCTCTCCCAGCACTATCACTTTGTCAAGCTTGGAATGTCCAGCTGTATCTGGGACTGATGTCCCAACTGAGCAGTCTGAGGATTCTCAGAAGCTGAATAACCATGATGCGGTGAACTCAGTGTTGAGCAAATTCCGTGATCTGAATCTTGATGAGAATTTGGAGCATGTGACAGAAGATCAGAAAGATGAGGTAATTGTCAATCTATTTCATCAGATTAAGGATCTTGAGAAACAGGTAAAGGAGCGAAAAGATTGGGCCCATCAGAAGGCAATACAGGCCGCAAGAAAGCTAAGTAATGATTTGACTGAACTGAAAATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCGCTTGAGGATACAACTATGAAAAGACTCTCAGAGATGGAGAATGCTTTAAGAAAGGCCAGTGGTCAAGTGGACCGTGCAAATGCATCTGTGAGACGGCTTGAGACAGAGAATGCAGAGATTAAAGCAGAGATGGTGGCTTCCAACTTAAGTGCTTCAGAATCAGTTTCAACTTGCTTGCAAGCAGCAAAGAGGGAGAAAAAGTGCATGAAGAGGCTTGTAGCTTGGGAAAAACAGAAAGCTCAGCTACACAGAGAAATTTCAGGTGAGAAAGGGAAGATATTGGAGATACAGGAAGAATTAGTTTGGATCAAACAGCGTCAAAAAGATGCTGAGATCAAGTGGAGGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGGATTAGTTGAGGAGGAGCGACGCGCTAAGGAAGCAGCGGAGGCTAATAACAAGCGGAAGCTTGAAGCTTTGCGCCTAAAGATAGAGATAGATTTCCAGCGCCACATGGATGATCTCCTAAGGCTGGAGCAGGAGCTTTCACGCATAAAAGCATCTGCTCAGTCAGCTGACTTTCAAAATCAATCAAATACTTCACCTGCAAGTGAGTCTGAGGGTGCAAAGCCCCAAAGAGAGACAATTGCTAAGATGCTTCAAGAATTAGAGAAACAGGAGGCCTTTTCAGATAAAGAAGTGAACTGTGATAGGGAATGCATAATATGCATGAAAGATGAAGTCTCTGTTGTTTTCTTGCCTTGTGCCCACCAAGTTATGTGCGCTAGTTGCAGTGATGAGTATGGGAGGAAGGCCAAAGCTGCTTGTCCTTGCTGTCATGTTCCGATTGAGCAGAGGATTCACGTATTCGGGGCAAGTTCGTAG 2181 0.437 MGCTVREKHLRANRRPRSPKPDMDSCCFLDKASFSKSLLESSMKPLKNHLAINDSSQNLNPNSKHTLNPNFSLNVEETGWGYCTEEQLEEILLKNLEYLYNEAVSKLVALGYDEDVAIKAILRNGHCYGGMDVLSNILHNSLAYLNSNCNSTCTSINGNSDGSDPVFSDLRQLEGYSLEGMVGLLRQVRPHLSKGDAMWCLLMSDLHVGRASAMEIPLHPAPGNGCPPNASEAVSNSVGVLAPTLCRFHGGWGFGNGGGSDLPTDGFFSYSAEMNLQRDIELPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQTQAKASPSTITLSSLECPAVSGTDVPTEQSEDSQKLNNHDAVNSVLSKFRDLNLDENLEHVTEDQKDEVIVNLFHQIKDLEKQVKERKDWAHQKAIQAARKLSNDLTELKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANASVRRLETENAEIKAEMVASNLSASESVSTCLQAAKREKKCMKRLVAWEKQKAQLHREISGEKGKILEIQEELVWIKQRQKDAEIKWREELKAKEEALGLVEEERRAKEAAEANNKRKLEALRLKIEIDFQRHMDDLLRLEQELSRIKASAQSADFQNQSNTSPASESEGAKPQRETIAKMLQELEKQEAFSDKEVNCDRECIICMKDEVSVVFLPCAHQVMCASCSDEYGRKAKAACPCCHVPIEQRIHVFGASS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0371 726 PANTHER OS05G0141500 PROTEIN 1 721 IPR046934 -
Alju12g0371 726 MobiDBLite consensus disorder prediction 1 22 - -
Alju12g0371 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 723 IPR013083 -
Alju12g0371 726 ProSiteProfiles Zinc finger RING-type profile. 672 712 IPR001841 -
Alju12g0371 726 Coils Coil 561 591 - -
Alju12g0371 726 Pfam Zinc finger, C3HC4 type (RING finger) 669 717 - -
Alju12g0371 726 SMART ring_2 672 711 IPR001841 -
Alju12g0371 726 SUPERFAMILY RING/U-box 660 718 - -
Alju12g0371 726 Coils Coil 452 486 - -
Alju12g0371 726 MobiDBLite consensus disorder prediction 621 644 - -
Alju12g0371 726 CDD RING-HC_MIP1-like 669 721 - -
Alju12g0371 726 Pfam Family of unknown function (DUF6592) 95 214 IPR046527 -
Alju12g0371 726 MobiDBLite consensus disorder prediction 621 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0371 Alju-ChrAlju12 4533100 4537147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0371 672 722 C3H Transcription Factor Family AT1G73950 43.137 5.45e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1938 09 43193474 43197249 Alju12g0371 12 4533100 4537147 CCT