Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0363 ATGGATTCGCGGGAGCCGCAGCCCCCTCAACCGCCGCAATTACAGTCGATGGCACAAGCACAACCACCGTCTGCGGTGCCTAACATGATGATGGGACCGACTTCGTATGGTTCTGTCATGCCGAACCCGAACACATCTACCCTGATCAGCCCCAATTCAACGGCCTCGATGATGGCCCCTGCCACCGCCGCACGATTCCCCTTCAACACCATGGTTCCACAACCCCCTGCTCCGTCTAAACCTATGGAGCATCTGAACAACAATGCTAGTCCTTTCGATGGGTCATCGCCCGCGATGAGGCCATGTGGGTTTAGTATTGATTCTACGAAGAAGAAGAGAGGCCGGCCGAGGAAGTATTCGCCGGATGGTAACATTGCTTTGGGTTTGACTCCCACTCCCGTGTCTACTTCTGCTGCTGGTCAAGGAGATTCAAGCGGTACACCTTCGACGGAACCTGGAACCAAGAAGCACAGGGGAAGGCCACCGGGTTCTGGAAAGAAGCAGCTGGATGCTCTTGGAGCTGGCGGTATTGGTTTTACTCCGCACGTAATATTGGTAAAAGCCGGTGAGGACATTGCTGGAAAGATTGTGGCCTTTTCACAGCAAGGGCCTAGGACAGTTTGTATTCTTTCTGCGATTGGTGCAATCAGCAATGTTACCCTTAGACAGGCAGCAATTTCTGGCGGTACTGTGCAATATGAGGGCCGATTTGAGATCATATCTTTATCAGGTTCTTTCCTGCCATGTGAAGAGAATGGTCGTAGCAGAGCAGGTGGTTTTAGTGTGTCTCTTGCGGGGTCAGATGGTAAAGTTTTAGGTGGCGGAGTTGCTGGAATGCTAATCGCCGCATCCCCAGTGCAGGTCATTGTGGGTAGCTTTATTGCTGATGGGAAAAAGTCAAGCGCAAATACTCAGAAATCAGGGCCATCTTCAGCACCAGCCTCCCAAATGTTAAATTTTGGTGCACCTACAACTTCTACCAGCCCTACCTCTCAAGGCCCTTCATCCGAGTCGTCTGAAGAGAATGAGAATAACGGTGATTTTAATAGGGGACCTGCACTCTACAATAATACTAGCCAGCCCACCATTCACAATATGCAGATGTATCATCCTCAACTATGGGCTGGTCAAACCCAGCAGTGA 1143 0.5092 MDSREPQPPQPPQLQSMAQAQPPSAVPNMMMGPTSYGSVMPNPNTSTLISPNSTASMMAPATAARFPFNTMVPQPPAPSKPMEHLNNNASPFDGSSPAMRPCGFSIDSTKKKRGRPRKYSPDGNIALGLTPTPVSTSAAGQGDSSGTPSTEPGTKKHRGRPPGSGKKQLDALGAGGIGFTPHVILVKAGEDIAGKIVAFSQQGPRTVCILSAIGAISNVTLRQAAISGGTVQYEGRFEIISLSGSFLPCEENGRSRAGGFSVSLAGSDGKVLGGGVAGMLIAASPVQVIVGSFIADGKKSSANTQKSGPSSAPASQMLNFGAPTTSTSPTSQGPSSESSEENENNGDFNRGPALYNNTSQPTIHNMQMYHPQLWAGQTQQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0363 380 CDD DUF296 180 293 IPR005175 -
Alju12g0363 380 Pfam Plants and Prokaryotes Conserved (PCC) domain 181 293 IPR005175 -
Alju12g0363 380 SMART AT_hook_2 155 167 IPR017956 GO:0003677
Alju12g0363 380 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Alju12g0363 380 MobiDBLite consensus disorder prediction 74 172 - -
Alju12g0363 380 MobiDBLite consensus disorder prediction 299 362 - -
Alju12g0363 380 MobiDBLite consensus disorder prediction 129 152 - -
Alju12g0363 380 ProSiteProfiles PPC domain profile profile. 175 314 IPR005175 -
Alju12g0363 380 MobiDBLite consensus disorder prediction 1 16 - -
Alju12g0363 380 MobiDBLite consensus disorder prediction 1 45 - -
Alju12g0363 380 SUPERFAMILY AF0104/ALDC/Ptd012-like 179 295 - -
Alju12g0363 380 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 59 343 IPR039605 GO:0003680
Alju12g0363 380 Gene3D - 181 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0363 Alju-ChrAlju12 4429749 4435767 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0363 80 333 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 53.521 1.16e-76 241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1943 09 43223785 43227803 Alju12g0363 12 4429749 4435767 CCT