Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0360 ATGGGTACAGAGATTGGCCTTCTCTCCTCCATGACTCAGATCCAAAAATTGTCACAATCCCAATACAACAACCATCCCAATAATCACAATAATCACCTTCTTCTTCATCTTCAATCTCACCCTCTCTCAAACCCTAGCTCTTCTTTATCTTCTTCTTCTTCAACCTCCTTCTGGATCATGTGGAACCCTAGGGACCCTCAGGAAGAAGATGACTCTTGGGAGGTTAGAGCTTTTGCTCAGGACACCACTAACATCATGGGCACCACTTGGCCTCCCAGGTCATACACCTGCACTTTTTGTCGTAGGGAGTTCCGTTCAGCCCAAGCTCTCGGCGGCCACATGAATGTTCACCGCCGTGACCGTGCCCGTCTGCACCATCACCACCACCACCAACTACCACCACCTTCTGCTGCTACGGTTGCTGCTGCTGCTGCTGCTGCTGCTTCCGTTCACAACAACCTAATCTCGCCTCGCCATCATCACCAAGAGCTTGTTGTTGCTAATAACAACAACGGCAGATTCTTTCTCTACCATTTGCCAAACCCTGATGGGATTGGAAACTTGTCTGGTACTAGTAATTATACTTCTCATAATCTTGCTTCTTCTTCTTCTTCTTTGAATGCATGTGGAGATCCATCAGTATCTGTATCACCCACCACGCTTCTCTCTATTTTTCCCTACCCACCAAGCATTAATAACTTGGTGTCAAGTACTAGCACCACCCTCTCCTATGATTTTCAACTGGAGCGGAGGCCTCGAGGATTCGTTAATTCTTCTTCTTCTTATGGTGATTCTAGCAACAAAGTGGAACAGCCCACGACCTCGTCCTTCGCCGGCAACGGTGGCCACGAGGAGCTTGATCTAGAGCTCCGGCTGGGGCACAGACCACCTGCACCAAGAAGAAACCAAAAACGGTGTGTCTGA 924 0.4859 MGTEIGLLSSMTQIQKLSQSQYNNHPNNHNNHLLLHLQSHPLSNPSSSLSSSSSTSFWIMWNPRDPQEEDDSWEVRAFAQDTTNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHHHHQLPPPSAATVAAAAAAAASVHNNLISPRHHHQELVVANNNNGRFFLYHLPNPDGIGNLSGTSNYTSHNLASSSSSLNACGDPSVSVSPTTLLSIFPYPPSINNLVSSTSTTLSYDFQLERRPRGFVNSSSSYGDSSNKVEQPTTSSFAGNGGHEELDLELRLGHRPPAPRRNQKRCV 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0360 307 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Alju12g0360 307 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Alju12g0360 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Alju12g0360 307 MobiDBLite consensus disorder prediction 257 280 - -
Alju12g0360 307 MobiDBLite consensus disorder prediction 257 307 - -
Alju12g0360 307 SMART c2h2final6 95 117 IPR013087 -
Alju12g0360 307 Gene3D Classic Zinc Finger 82 145 - -
Alju12g0360 307 Pfam C2H2-type zinc finger 95 119 - -
Alju12g0360 307 PANTHER OS07G0101800 PROTEIN 67 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0360 Alju-ChrAlju12 4367834 4368757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0360 60 190 C2H2 Transcription Factor Family AT4G17810 52.518 2.73e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju12g0360 zf-C2H2_6 7e-06 CL0361