Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0357 ATGACCAGAAGGAAGGTGAAGCTCGCGTTCATCGGCAACGACTCAGCGAGGAAGACAACATACAAGAAGAGGAAGAATGGCATGGTGAAGAAGACAAGTGAACTGGTCACACTTTGTGGGGTTGAGGCGTGTATGATAATTTACAGTCCTTATGATGCTGAGCCTGAGATTTGGCCTTCCTCCATGGGAGTCCAAAGCACGGTTGCGAGGTTCATGCAGACGCCGGAGATGGATCAGTGTAAGAAGATGACGAACCAGATGAGCTTCACAAGGGAAAGGATCCAGAAAGTTAGTGAGCAGGTGAAGAAGATGAGGAAGAACAATAGGGAGAAGGAGCTGGCCCAGATCATGAAGATGGAGGCAGAGGAGAATGAAATCCAAATCCAAAGTCAGGGACAAGCAGAAGCAGAGGAAGATCATAACAATGGCGAGGGAATCGTGGAGATGATGAGCATAAGCACATTTGGAGATGCAAATCTCTATAATGCTTGGCATAGCTCCTTTTACTTCTGA 513 0.4717 MTRRKVKLAFIGNDSARKTTYKKRKNGMVKKTSELVTLCGVEACMIIYSPYDAEPEIWPSSMGVQSTVARFMQTPEMDQCKKMTNQMSFTRERIQKVSEQVKKMRKNNREKELAQIMKMEAEENEIQIQSQGQAEAEEDHNNGEGIVEMMSISTFGDANLYNAWHSSFYF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0357 170 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Alju12g0357 170 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Alju12g0357 170 Coils Coil 80 139 - -
Alju12g0357 170 PANTHER MADS BOX PROTEIN 3 122 - -
Alju12g0357 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju12g0357 170 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Alju12g0357 170 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Alju12g0357 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Alju12g0357 170 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Alju12g0357 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju12g0357 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju12g0357 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0357 Alju-ChrAlju12 4339851 4340473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0357 1 117 Type I MADS-box Gene Family AT5G48670 57.265 5.36e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju12g0357 SRF-TF 6.1e-17 No_clan