Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0352 ATGGAATCGATGGAGGAAATATCATGGGAAAGCTTGCTCCAGGATTTGGAAATAGCTGGTGATTTCAGTTTTGCTTTTGAGGCTCATGATCAATTGTTTAGCAGTCCATCGCAAGAAAACTTTCAAAGTTGTTGGAATAGTGATAATAATCATACAGATACTACCTTGAACGCTGAAAATGGCATCTTCCTCACGAGCAATAATCCTTCAACTTCAGAATCAGTAGTCAACACCCAACATCTCACGGTTGCTAATTCCCATGATTATGCTGTCTTCATGGTACAAGACAAGGCTTCTTCTTTTGATGATCCTTCAAAGTCGCACTTGCAGAATCAAACAAATATTAAGGAAAGAGACAGGAGGACAGAGGGTAGAAATTCACGAGTACAAGATCACTTACTTGCTGAGAGAATCAGAAGAGGAAAGATCTCCCAACACTTCATTGCTCTCTCAGCCCTAATTCCTGGCCTCAAAAGGGCGGACAAGGCGTCTGTGTTGGAGGGAGCTATAAAGCATGTGAGGCAGCTTCAAGAACAAGTGAAATCACTGGAACAACAGACCAAGAAGAATAAAACTGGAGAATCTGTGGTGTTTGTGAAGAAGTCTGAGCTGGTATCTAAGACGGACAACACGACGTTGTTTAATAATTCACAGTGGAATAGCAAAGTAGCAGAAGCAGATGTTGAAGCAAGGGTTTCAGAAAAGAAGGTGTTGATTAGAGTGCAATGTGAGAAAAGAGAAGGAATAATGGTGAAGACAATGAAGGAGATGGAAAAACTTCGCTTGTCTGTGGTAAATAGTAGTGTGATGCCATTTGGTAGATCCATCATCGACATCACTATCATAGCCGAGATGGAGGATGAGTTCAACTTGAGCGGCAAAGAGCTGGCTAGAAATCTCAGGGTGGCACTCTTACAACCAATATAA 927 0.4164 MESMEEISWESLLQDLEIAGDFSFAFEAHDQLFSSPSQENFQSCWNSDNNHTDTTLNAENGIFLTSNNPSTSESVVNTQHLTVANSHDYAVFMVQDKASSFDDPSKSHLQNQTNIKERDRRTEGRNSRVQDHLLAERIRRGKISQHFIALSALIPGLKRADKASVLEGAIKHVRQLQEQVKSLEQQTKKNKTGESVVFVKKSELVSKTDNTTLFNNSQWNSKVAEADVEARVSEKKVLIRVQCEKREGIMVKTMKEMEKLRLSVVNSSVMPFGRSIIDITIIAEMEDEFNLSGKELARNLRVALLQPI 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0352 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Alju12g0352 308 SMART finulus 133 182 IPR011598 GO:0046983
Alju12g0352 308 PANTHER BHLH TRANSCRIPTION FACTOR 31 306 - -
Alju12g0352 308 MobiDBLite consensus disorder prediction 100 128 - -
Alju12g0352 308 MobiDBLite consensus disorder prediction 112 128 - -
Alju12g0352 308 Coils Coil 166 193 - -
Alju12g0352 308 Gene3D - 123 196 IPR036638 GO:0046983
Alju12g0352 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 187 IPR036638 GO:0046983
Alju12g0352 308 Pfam Helix-loop-helix DNA-binding domain 130 177 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0352 Alju-ChrAlju12 4299902 4301685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0352 127 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.778 1.31e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju12g0352 HLH 6.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1953 09 43362325 43364021 Alju12g0352 12 4299902 4301685 CCT
Alju12g0352 12 4299902 4301685 Alju12g0352 12 4299902 4301685 ECH