Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0351 ATGATGGAAATAGCCTCAGCCATGTACTTGCCTGAATTCGTAAGCAACCCCAATTACTCATCAGCTAATAACGAATTTGATTATTATGAGGGGATGGAGGATACTACATTGTTTGAGGAGTTACCGATGGATTATTTTGATGGTCTTGATTTCCATTCCTTGGTTTCCGATTCCCCTAATCACCAGAATCCTGAGTCAATTATTATTGCGCCACCACCAGCTCCAACACCAAATAAGTCTGCAACTACTTCCAGACTTATTTCTTTTGAGCAATCCAATAATAATAATAATGCGCACCGATTTTACAATAATCTGAGTTCCAATGTGAAGCTTGAAAGTCCGAATGCAGAAAACGTATTGAATTTTGAGTCTTTAAGCCGTCAAAGTGCATACTTTGAAGACATAAATGAGAGACTGACGGCGAAGAACATGGCCGGCACCGCCGTGACCAGGAATCCACTCCAAGCTCAAGATCACGTCTTGGCCGAAAGAAGACGAAGGGAAAAGCTGAACCAGAAGTTCATTGCTCTCTCCTCCATCATTCCTGGCCTCAAGAAGATGGACAAGGCATCAGTGTTGGGAGATGCAATAGAGTATGTAAAACAACTGAAGGAACGCCAGAAGGTTCTGGAAGAACAAGTGGCCATGAAAAGAAAGGAATCGGTGAGAAGAAGTATTCTCTTCGCCAGCGACAATGATAAGTCGCCGTCCGGTGAAGTTTCCGAGCAGGCATTGGCAGAAATGGAAGCCAGGGTTTTTGGTAAAGAAGTACTCATCAGAATCCAATGCGAGCAACAAAGAGGGTGTGAGGCTAAAATACTTAGAGAATTAGAAAACCTTCGTCTCACAGTTAAAAGCAGTAGCATCTTGCCATTTGGTGAAACCACTCTATATATAACTATCACAGCTGAGATGGAGAAGGAGAACAGTATGACAGCAAATGATTTAGTGACAAGTCTGAGGAAGGCATTGACATTATTCGAATAG 987 0.4245 MMEIASAMYLPEFVSNPNYSSANNEFDYYEGMEDTTLFEELPMDYFDGLDFHSLVSDSPNHQNPESIIIAPPPAPTPNKSATTSRLISFEQSNNNNNAHRFYNNLSSNVKLESPNAENVLNFESLSRQSAYFEDINERLTAKNMAGTAVTRNPLQAQDHVLAERRRREKLNQKFIALSSIIPGLKKMDKASVLGDAIEYVKQLKERQKVLEEQVAMKRKESVRRSILFASDNDKSPSGEVSEQALAEMEARVFGKEVLIRIQCEQQRGCEAKILRELENLRLTVKSSSILPFGETTLYITITAEMEKENSMTANDLVTSLRKALTLFE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0351 328 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Alju12g0351 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Alju12g0351 328 SMART finulus 160 209 IPR011598 GO:0046983
Alju12g0351 328 Coils Coil 200 220 - -
Alju12g0351 328 Gene3D - 151 215 IPR036638 GO:0046983
Alju12g0351 328 PANTHER BHLH TRANSCRIPTION FACTOR 20 324 - -
Alju12g0351 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 221 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0351 Alju-ChrAlju12 4270045 4271521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0351 65 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.580 8.31e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju12g0351 HLH 1.5e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g0351 12 4270045 4271521 Alju12g0351 12 4270045 4271521 ECH