Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0337 ATGGCTCTTCCTTCTGATTCCACTTCCTCAGACCTGAAGCTTGTTCTAGGGCTTGGCTCTGATATCATCTGCACCACCGCTACTCTGAAGAAACCTTCCTCTAATGACACTGTTACCAGTGGTGTGTGTGAGCCGTCTTTGACGTTGGCTCTCTCTGCAGGCCACACTAATAATTACCTTGTTCCCAAGAAGATTGATGTGAATGTCAAAGCTGCTAATTGTTGTGAGGAAACACCTCTTGATCACTTGTGTCGCCAGACTTCTTCGCCTCACAGTGTGGTCTCCTCTTTTTCCGGTGGGAGGGTCAAGAGGGAGAGGGATCTCGTCAGCGAGGAGGCCGAGGCAGAGAGGCTTTCTTCCAGAGTCAGCGACGAAGACGAAGATGGCTCTAATGCTAGGAAGAAGCTCCGCCTCACAAAAGAACAATCTGCTCTCCTTGAAGAAAGCTTCAAACAGCACAGCACACTGAACCCCAAGCAAAAGCAGGCCTTAGCCAGGCAGTTAAATCTACGGCCTCGCCAGGTTGAAGTTTGGTTCCAGAATAGAAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTCTTGAAGAAATGTTGTGAGACGCTGACGGATGAGAACAGGAGGCTCCAGAAGGAGCTGCAGGAACTGAAGGCGCTGAAGCTATCTCAGCCGTTGTACGTGCCGATGCCGGCGGCCACCCTCACCATGTGCCCGTCCTGCGAGAGGCTGGCCGGCGTCGGCGACGGTGGTTCCAACAATAAGATCCCATTCTCCATGACTCCCAAGCCCACTCACCTCTACAACCCCTTCAACAATCCTTCAGCAGCATGTTGA 843 0.5219 MALPSDSTSSDLKLVLGLGSDIICTTATLKKPSSNDTVTSGVCEPSLTLALSAGHTNNYLVPKKIDVNVKAANCCEETPLDHLCRQTSSPHSVVSSFSGGRVKRERDLVSEEAEAERLSSRVSDEDEDGSNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYVPMPAATLTMCPSCERLAGVGDGGSNNKIPFSMTPKPTHLYNPFNNPSAAC 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0337 280 Pfam Homeodomain 133 187 IPR001356 GO:0003677
Alju12g0337 280 Gene3D - 126 194 - -
Alju12g0337 280 SMART halz 189 232 IPR003106 GO:0006355|GO:0043565
Alju12g0337 280 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355|GO:0043565
Alju12g0337 280 Coils Coil 108 128 - -
Alju12g0337 280 FunFam Homeobox-leucine zipper protein 18 119 194 - -
Alju12g0337 280 Coils Coil 195 225 - -
Alju12g0337 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 252 - -
Alju12g0337 280 CDD homeodomain 133 190 IPR001356 GO:0003677
Alju12g0337 280 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Alju12g0337 280 SUPERFAMILY Homeodomain-like 124 190 IPR009057 -
Alju12g0337 280 SMART HOX_1 131 193 IPR001356 GO:0003677
Alju12g0337 280 MobiDBLite consensus disorder prediction 105 135 - -
Alju12g0337 280 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0337 Alju-ChrAlju12 4112640 4113818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0337 6 280 Homeobox Transcription Factor Family AT4G37790 59.450 3.52e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju12g0337 Homeodomain 1.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1967 09 43461587 43462752 Alju12g0337 12 4112640 4113818 CCT