LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju12g0315	ATGGGAACTTCACCTGTAAACTCCTTCTTCTTTAGCTTGCTGCTAATTCTTGAGTTTTCATCAGAGTTTGTAGGAAGCTGGAATAGCTGTCCAGAACCTGAAACAACTTGTGGAAACCTTCCTGTTCGGTTTCCTTTCCGAGTATTAGAACGCCAACCAAAACAATGTGGCTATCCTGGGTTTGATTTACAATGTTCTTCTGCAAATCAAGCTGTTCTTAAACTTCCTGGATCAGTCAAGCTCAATGTCAAACACATTGATTACAAATCCCAAACCATTCACTTATATGATCCTTCTGGCTGCCTTTTAAGGCATGTCCCTAACCTCACTCTTCCTTCCCCTTTCCAATTTATAATGAATGTCCATGACTACATTCTTTTCAATTGCTCATCACCGAAACAGAGAAGACTATTTTCAACGTGCCTCAGCAGCTCTACCTATCAAGTATATGCCGTTCCATCTTATGAAAATATTGGAGAACTTCCCTTGTTATTTTGCCGCAAAATGTTTGACATTCTATCCATCCCATATGAGATTATTCAGCTTCAAGGCACACTTCATTTGAATTGGTCTCATCCAATGTGTGAACGTTGTGAATCGAATGAAACAAGATGTGGATTCAAGAATAGTTCTACCAGTCATGATACTGCATGTTTCGAGGTTCTTCACAAAGGTTCATCAAACAAATTTGTAATTACAGGATCAATCATAGGCTCATTTCTGGTGGTGAGTACTCTTGTTGCAATTGTTTATATCAGTAACTCTTATAAATCACGGAAAGAAAGCCAAGCCATAATTGAGAAGTTTCTCAAAGATTATAGAGCTCTCAAGCCCACCAGATATTCTTATGCTGAAATCAAGAGGATTACCAATCAATTTGAAGTCAAGTTAGGGGAAGGATCTTTTGGTACCGTGTTCAAAGGAAACATTTCATCTGAGTTCAAAGTTGCAGTGAAGATCCTCACTAATTCTGAAGGAAATGGGGAAGAGTTTGTCACTGAAGTTAGAACAATGGGCAAAATCCATCATGTAAACATTATTCGCTTAATGGGCTTCTGTGCTGATGGCTTTAGAAGAGCGCTGGTTTACGAATACTTTCCAAATGGCTCATTGCAAAATTTCATAAATTCACCAGATAATAGGCAAAACTTTATTGGTTGGCAAAAGCTCCATGAAATTGCTCTAGGCATAGCCAAAGGAATTGAGTACCTTCATCAAGGGTGTGAGCAATGCATACTTCATTTCGACATCAAACCTCACAATGTTTTATTAGATAATGACTTCACTCCAAAAATATGTGATTTTGGTTTAGCTAAATTGTGTTCTAAAGATCAAAGTACAGTGTCAATGACTAACGTTAGAGGAACTTTGGGTTACATAGCTCCAGAAGTCTTCTCTCGAAATTTTAGAAATGTATCTCACAAAGCAGATGTTTATAGTTTCGGGATGTTACTACTTGAATTAATAGGGGGAAGAAGAATTACGCATGACACAAAAGAAAATGCTTCCCACATTTATTATCCTGAATGGATCTATAATATTTTAGAAGAAAGAGAGGATTTTAGGATTCATATTGAGGAAGAAGGTGATGCTAAAATTGCGAAAAAGTTGGGAATAGTGGGACTATGGTGCATTCAGTGGCATCCTGTTGATCGACCATCAATGCAAGCAGCGGTTCAAATGTTAGAAGGAGAAGGAGATAAATTACCAATACCTCCAAATCCTTTTGATTCTGAAGGCACGTCAACAAGAAAAAGGGCTAGTGCGCTTACAAGAAACCTGATACAAGGTTTAGAAATAATCCAAGAAGTAGAGTGA	1818	0.3784	MGTSPVNSFFFSLLLILEFSSEFVGSWNSCPEPETTCGNLPVRFPFRVLERQPKQCGYPGFDLQCSSANQAVLKLPGSVKLNVKHIDYKSQTIHLYDPSGCLLRHVPNLTLPSPFQFIMNVHDYILFNCSSPKQRRLFSTCLSSSTYQVYAVPSYENIGELPLLFCRKMFDILSIPYEIIQLQGTLHLNWSHPMCERCESNETRCGFKNSSTSHDTACFEVLHKGSSNKFVITGSIIGSFLVVSTLVAIVYISNSYKSRKESQAIIEKFLKDYRALKPTRYSYAEIKRITNQFEVKLGEGSFGTVFKGNISSEFKVAVKILTNSEGNGEEFVTEVRTMGKIHHVNIIRLMGFCADGFRRALVYEYFPNGSLQNFINSPDNRQNFIGWQKLHEIALGIAKGIEYLHQGCEQCILHFDIKPHNVLLDNDFTPKICDFGLAKLCSKDQSTVSMTNVRGTLGYIAPEVFSRNFRNVSHKADVYSFGMLLLELIGGRRITHDTKENASHIYYPEWIYNILEEREDFRIHIEEEGDAKIAKKLGIVGLWCIQWHPVDRPSMQAAVQMLEGEGDKLPIPPNPFDSEGTSTRKRASALTRNLIQGLEIIQEVE	605

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju12g0315	605	ProSiteProfiles	Protein kinase domain profile.	291	577	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju12g0315	605	ProSitePatterns	Protein kinases ATP-binding region signature.	297	319	IPR017441	GO:0005524
	Alju12g0315	605	FunFam	PR5-like receptor kinase	366	573	-	-
	Alju12g0315	605	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	412	424	IPR008271	GO:0004672\|GO:0006468
	Alju12g0315	605	SMART	serkin_6	291	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju12g0315	605	Pfam	Protein kinase domain	294	560	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju12g0315	605	Pfam	Wall-associated receptor kinase galacturonan-binding	30	97	IPR025287	GO:0030247
	Alju12g0315	605	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	262	581	IPR045874	GO:0004672
	Alju12g0315	605	Gene3D	Phosphorylase Kinase; domain 1	264	365	-	-
	Alju12g0315	605	FunFam	serine/threonine-protein kinase PBS1-like	257	365	-	-
	Alju12g0315	605	Gene3D	Transferase(Phosphotransferase) domain 1	366	568	-	-
	Alju12g0315	605	SUPERFAMILY	Protein kinase-like (PK-like)	275	563	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju12g0315	Alju-ChrAlju12	3883539	3885673	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju12g0315	33	575	Receptor kinase-like Gene Family	AT5G38260	37.031	1.40e-108	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Alju12g0315		Pkinase	8.8e-51	CL0016