LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju12g0314	ATGTTGGATGAGGCCAAAGGTAATGGACATGAATTCATGAGCGAAGTTGCTGCACTTGGTAGAATCCACCATCTCAATGTGGTCCAACTCATTGGTTATTGTGTGGAAGGACCAAAACGTGCTCTCATATACGAGTTCATGGAGAATGGGTCTCTTGACAAATACATTTTCTCTAAACCCAATGACAATGAGCCATCCTTGAGTCTTCATCAATTGTATGACATTTCTCTCAGAGTAGCTCGTGGTATTGACTATCTACATAAAGGATGCAACATGCAAATTTTGCATTTTGATATAAAGCCGCACAATATCCTTCTTGATGATAACTTCGTTCCGAAGGTCTCTGATTTTGGCCTTGCTAAACTTTATCCTACAGATAATAGCGTTGTGTCTCTAACAACAGCAAGGGGAACTATAGGATACATTGCTCCTGAATTGTTCTACAGAAATGTGGGAGAAATCTCTTCTAAAGCCGATGTCTATAGTTTTGGAATGCTATTGATGGAAATAGCTGGTAGAAGGAAGAATTTGAATGTATTGGCTGAACACTCAAGTCAATTTTACTTCCCGTTTTGGGTATATGATCAACTAAATGAAGGGAATGAAATCAACATAGAAGATGCAACAGAGGAAGAAATGAAAGTGGCAAGGAAAATGATGATCGTTGGGTTGTGGTGCATTCAAACTAGGCCTAGCGATCGTCCTTCAATGAATAAAGTTGTGGAGATGCTTGAGGGAGATGAGCAAGAATTAGAATTGCCTCATCAAAAGCCTTCTTTTGGTTCTCAAGATTTACCTGAAGCTGATGATAATAATCATTCAAGTTCAATGATCACATCATCCGAGCACGGGGAATGTTCTTCAATGGATGAAATTGTAGAGATGACAGAGGAAAAGGAGTAA	903	0.392	MLDEAKGNGHEFMSEVAALGRIHHLNVVQLIGYCVEGPKRALIYEFMENGSLDKYIFSKPNDNEPSLSLHQLYDISLRVARGIDYLHKGCNMQILHFDIKPHNILLDDNFVPKVSDFGLAKLYPTDNSVVSLTTARGTIGYIAPELFYRNVGEISSKADVYSFGMLLMEIAGRRKNLNVLAEHSSQFYFPFWVYDQLNEGNEINIEDATEEEMKVARKMMIVGLWCIQTRPSDRPSMNKVVEMLEGDEQELELPHQKPSFGSQDLPEADDNNHSSSMITSSEHGECSSMDEIVEMTEEKE	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju12g0314	300	ProSiteProfiles	Protein kinase domain profile.	1	251	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju12g0314	300	MobiDBLite	consensus disorder prediction	265	286	-	-
	Alju12g0314	300	Pfam	Protein tyrosine and serine/threonine kinase	8	244	IPR001245	GO:0004672\|GO:0006468
	Alju12g0314	300	FunFam	PR5-like receptor kinase	47	256	-	-
	Alju12g0314	300	Gene3D	Transferase(Phosphotransferase) domain 1	51	262	-	-
	Alju12g0314	300	PIRSF	TyrPK_CSF1-R	54	300	-	-
	Alju12g0314	300	PIRSF	TyrPK_CSF1-R	5	62	-	-
	Alju12g0314	300	MobiDBLite	consensus disorder prediction	247	300	-	-
	Alju12g0314	300	Gene3D	Phosphorylase Kinase; domain 1	1	50	-	-
	Alju12g0314	300	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	94	106	IPR008271	GO:0004672\|GO:0006468
	Alju12g0314	300	SMART	serkin_6	4	244	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju12g0314	300	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	6	267	IPR045874	GO:0004672
	Alju12g0314	300	SUPERFAMILY	Protein kinase-like (PK-like)	10	245	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju12g0314	Alju-ChrAlju12	3876643	3877545	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju12g0314	1	268	Receptor kinase-like Gene Family	AT1G66910	52.206	2.58e-90	280

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Alju12g0314		PK_Tyr_Ser-Thr	1.8e-40	CL0016