Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0309 ATGGGTTACTCTCGTGGAAAATTAATGGAGGCTCTGTTTCTGATAATGTTATTCTGCAGAACTAGCAAGGCATCCGGTGAACACCAAAACTGTTCAAGTTCATGCGGAGATCACAACATTATAAGCCCTTTTCGGCTACAGGACTCTCCAGAGAAGTGTGGTGATTACAGGTACAACTTATCTTGCGAGCAAAACCAACTGGTAATGTACTGGCAGTCTGTGAGATACACTGTTTTGTTCATTAATTATGAGAAGTACACAATCAGAGTGAGGGATGCTAATATTGTGGAGTCAGACTCATCTTCCCTTCCTGGGAATTCTTTAACAGAATACAACTTTAGCCAAAAGGACCCATATACCTCCACCATTGCCACAGTCTATGCATTCACAAATGTTAGAGATTTTGACTATTATCAAATAATGAGACAACTAATGATATATGTAAGGTGCGAACACCCTGTGGATTCCCCTCAGTTTGTAGACACAGCCCCTTGCTTCAACACTTCAAATGCCTCTGATTCTTCTTCTTCTTCGTATTCGTATGTGAATGTTGGCAGCGAAATTCTCTGGTATTTGGGTTTAGACGATGATTGTGGTATACCACTCATATATATGACGTCGTGGCCTGCTCTGAAGAACAACCAGAATCAGTCTGCTTGGTCATGCAAAGACATCCACAAAATGCTTCTTTATGGCTTTGAGCTTTCTTGGCTCAACAGTTTCTGCCAAGACCCTGGAGATGATCAACGAATAATTCTCCGGGCAGCAACAAGCAATAGGATTTTAAAAATGATCCTTTGGAACATTCGGGCCTATACGACATACATCTACGCTCTAACATTATTAGGACAACTTCGACGTGGTCGTCACGTGGCTGTCAAGATGCTGGACAAGGCTGAAGCTAATGGTCAGGATTTCATCAACGAAGTTGCTACACTTGGTAGAATCCACCATGTTAATGTGGTGCAGCTCATTGGTTATTGCGTGGAAGGATCAAAACGTGCTCTTATATATGAGTTCATGCAGAATGGATCTCTTGATAAATACATTTTCTCTAAACATGACGATGGGCAATCCTTGGATCTTCATCAGTTGTTTGCCATTTCTGTTGGAGTAGCTCATGGTATTGAATATCTTCACAAAGGTTGCAACATGCAAATTCTGCATTTTGATATAAAGCCACACAACATCCTTCTTGATGATAACTTCATTCCTAAAGTTTCTGATTTTGGGCTTGCCAAGCTCTATCCTACTAATAATAGCATTGTAGCACTCATAGTAGTAAGAGGAACTATAGGATACATGGCCCCTGAACTTTTTTATAGAAATGTGGGTAGAGTCTCTAACAAAGCCGACATCTATAGTTTTGCGAAGTTATTAATGGATATTGCTGGTAGAAGAAAGAATCTAAATGTGTCAGCTCAATAG 1428 0.4041 MGYSRGKLMEALFLIMLFCRTSKASGEHQNCSSSCGDHNIISPFRLQDSPEKCGDYRYNLSCEQNQLVMYWQSVRYTVLFINYEKYTIRVRDANIVESDSSSLPGNSLTEYNFSQKDPYTSTIATVYAFTNVRDFDYYQIMRQLMIYVRCEHPVDSPQFVDTAPCFNTSNASDSSSSSYSYVNVGSEILWYLGLDDDCGIPLIYMTSWPALKNNQNQSAWSCKDIHKMLLYGFELSWLNSFCQDPGDDQRIILRAATSNRILKMILWNIRAYTTYIYALTLLGQLRRGRHVAVKMLDKAEANGQDFINEVATLGRIHHVNVVQLIGYCVEGSKRALIYEFMQNGSLDKYIFSKHDDGQSLDLHQLFAISVGVAHGIEYLHKGCNMQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPTNNSIVALIVVRGTIGYMAPELFYRNVGRVSNKADIYSFAKLLMDIAGRRKNLNVSAQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0309 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Alju12g0309 475 ProSiteProfiles Protein kinase domain profile. 266 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju12g0309 475 Pfam Protein tyrosine and serine/threonine kinase 287 464 IPR001245 GO:0004672|GO:0006468
Alju12g0309 475 Gene3D Phosphorylase Kinase; domain 1 276 341 - -
Alju12g0309 475 Gene3D Transferase(Phosphotransferase) domain 1 342 474 - -
Alju12g0309 475 Pfam Wall-associated receptor kinase galacturonan-binding 31 92 IPR025287 GO:0030247
Alju12g0309 475 FunFam Os07g0541700 protein 341 431 - -
Alju12g0309 475 SMART serkin_6 272 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju12g0309 475 SUPERFAMILY Protein kinase-like (PK-like) 279 467 IPR011009 -
Alju12g0309 475 PANTHER RUST RESISTANCE KINASE LR10-RELATED 283 470 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0309 Alju-ChrAlju12 3828206 3830640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0309 283 467 Receptor kinase-like Gene Family AT1G66910 58.378 6.66e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Alju12g0309 PK_Tyr_Ser-Thr 6.4e-35 CL0016