LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju12g0305	ATGGAAACTAGAGCTGTAAACTCCTTCTTCTTCATTTGCTTGTTGCTTATTGCTGGGTTTTCAGAATCTGTAGGAAGCTGGAATGGCTGTCCAGAACCTGAAACAACATGTGGAAACCTTCCTGTTCGATTTCCTTTCCGATTAATAGGACGCCAACCAGAACAATGTGGCTATCCTGGCTTTGATTTACAATGTTCTTCTGCAAATCATGCCGTTCTTGAGCTTCCTGGATCAGTCAAGCTCAATGTCGAACATATTGATTACCAATCCCAAACCATTCAGCTATCTGATTCTTCTGGCTGCCTTTCAAGGCATGTCCGTAATCTCACTCTATTTCCTTCCCCTTTCAAGTTCATGGAACAAAATCTTAATGACTTCACAATCTTCAATTGCTCGTCACCAAGAGATGGAGATATTATTTCAACTTGCCTCAGCAGCTCTGCGTACCAAGTTTATGCCGTTCAATCTTATCGTGACATTGGACAACTTCCCTTGTTATTTTGCAGCAAATTATTTAACATTTCATCTGTCCCACCTGAGATTTTTGATGCCGAGAACACTCTTTCTTTGACGTGGTCTCATCCAATGTGCAAACATTGTGAATCAAATGGAACAACATGTGGATTCAAGAATAGTACTACCAGCTACGAGACTACTTGTTTTGGGGATCGTCAGAGTGGTTCTTCAAACAAATATGTAATTACAGGATCAATCATGGGCTCACTTCTAGTGGTGAGTACTCTTGTTGCAGTTCTTTATATTTACAAGTCTTACAAATCACGGAAAGAAAGCCAAGCAATAATTGAAAAGTTTCTGAAAGATTATAGAGCTATGAAGCCCACCAGATATTCTTATGCTGAAATCAAGAGGATTACCAATCAATTTGAAGTCAAGTTAGGGGAAGGATCTTTTGGTACTGTGTTCAAAGGAAACATTTCATCAGAGTTTCAAGTTGCAGTGAAGATCCTAACTAATTCTGAAGGAAATGGTGAAGAGTTCATCACTGAAGTTGGAACAATGGGTAAAATCCATCATGTCAACATTATTCGCTTAACTGGATTTTGTGCTGATGGCTTTCGAAGAGCGCTTGTTTATGAATACTTTCCAAATGGTTCATTACAAAATTGCATAAGTTCACTAGATAACAGGCAAAACTTTATTGGTTGGAAAAAGCTCCATGAAATTGCTTTAGGCATAGCCAAAGGAATTGAGTACCTTCATCAAGGATGTGAACAACGCATACTTCATTTTGACATCAAACCTCACAATGTCTTACTAGATGATGATTTCACTCCAAAAATATGTGATTTTGGATTAGCTAAATTGTGTTCCAAAGATCAAAGCATAGTGTCAATGACTACCGCTAGAGGGACTTTGGGCTACATTGCTCCAGAAGTTTTCTCTCGAAATTTTGGTAGCGTGTCCCACAAGGCAGATGTTTATAGCTTTGGAATGTTGCTACTAGAAGTAATTAGAGGGACGAGAATCACCAATGACACAAAAGAGAATACTAGTGAAATATACTACCCAGAATGGATCTATAGCATGTTTGAAGGAAGAGAAGACGTAAGAATTCATATTGAAGAAGAAGGGGATGCAAAAATTGCAAGAAAATTGGGAATAGTGGGACTGTGGTGCATCCAATGGCATGCTGTGGATCGACCTTCAATGCAAGTGGTGGTTCAAATGTTAGAAGGAGAAGGAGACAAATTACTAATACCTCCAAATCCTTTTAATTCGGATGGCCCTTCAACAAGAGAAAAGGCCAACGTACTTGCAAGAAATCAAATTCAAGGCTTAGAAATAATTCATGAAGTAGAGTGA	1824	0.3876	METRAVNSFFFICLLLIAGFSESVGSWNGCPEPETTCGNLPVRFPFRLIGRQPEQCGYPGFDLQCSSANHAVLELPGSVKLNVEHIDYQSQTIQLSDSSGCLSRHVRNLTLFPSPFKFMEQNLNDFTIFNCSSPRDGDIISTCLSSSAYQVYAVQSYRDIGQLPLLFCSKLFNISSVPPEIFDAENTLSLTWSHPMCKHCESNGTTCGFKNSTTSYETTCFGDRQSGSSNKYVITGSIMGSLLVVSTLVAVLYIYKSYKSRKESQAIIEKFLKDYRAMKPTRYSYAEIKRITNQFEVKLGEGSFGTVFKGNISSEFQVAVKILTNSEGNGEEFITEVGTMGKIHHVNIIRLTGFCADGFRRALVYEYFPNGSLQNCISSLDNRQNFIGWKKLHEIALGIAKGIEYLHQGCEQRILHFDIKPHNVLLDDDFTPKICDFGLAKLCSKDQSIVSMTTARGTLGYIAPEVFSRNFGSVSHKADVYSFGMLLLEVIRGTRITNDTKENTSEIYYPEWIYSMFEGREDVRIHIEEEGDAKIARKLGIVGLWCIQWHAVDRPSMQVVVQMLEGEGDKLLIPPNPFNSDGPSTREKANVLARNQIQGLEIIHEVE	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju12g0305	607	FunFam	serine/threonine-protein kinase PBS1-like	259	367	-	-
	Alju12g0305	607	Pfam	Wall-associated receptor kinase galacturonan-binding	30	97	IPR025287	GO:0030247
	Alju12g0305	607	SUPERFAMILY	Protein kinase-like (PK-like)	276	565	IPR011009	-
	Alju12g0305	607	Pfam	Protein kinase domain	296	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju12g0305	607	ProSitePatterns	Protein kinases ATP-binding region signature.	299	321	IPR017441	GO:0005524
	Alju12g0305	607	SMART	serkin_6	293	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju12g0305	607	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	264	584	IPR045874	GO:0004672
	Alju12g0305	607	ProSiteProfiles	Protein kinase domain profile.	293	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju12g0305	607	Gene3D	Phosphorylase Kinase; domain 1	266	367	-	-
	Alju12g0305	607	FunFam	PR5-like receptor kinase	368	575	-	-
	Alju12g0305	607	Gene3D	Transferase(Phosphotransferase) domain 1	368	571	-	-
	Alju12g0305	607	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	414	426	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju12g0305	Alju-ChrAlju12	3818196	3820221	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju12g0305	8	577	Receptor kinase-like Gene Family	AT1G66910	37.441	3.39e-112	348

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Alju12g0305		Pkinase	1.7e-47	CL0016