Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0273 ATGAGTTGCAACGGTTGCCGAGTTCTTCGAAAAGGATGCAGTGAGAACTGTATATTGCGACCTTGCTTGCAGTGGATCGATAACCCTCAAGCCCAAGGTCACGCCACTGTGTTCGTCGCTAAATTCTTTGGCCGTGCCGGCCTTATGTCTTTCATTTCTAACGTCCCTCCCAACCAGAGGCCTGCTCTGTTTCAGTCCTTGTTGTTCGAAGCGTGCGGCCGGACGGTGAACCCTGTGAACGGAGCTGTCGGGCTTCTGTGGTCGGGAAACTGGCACGTATGCCAGACGGCCGTGGAGACAGTGCTGCGCGGTGGCACGTTGAAGCCCATGCCGGAGCTTGTAGGCTTGGATGCCCCGGCTCCGGCTACGGATGAGGCATCCGAAGGGGAGGTCACGTGCAATGGCATGTGGAGGATCCGAGATCCGAACTCGAATTTGCGATGCGATAACAAGGTCTCTCCCGGCGGCGGACTCAGACTGTCTGATGACTCTGCCATGCTCCAGACGACCGATCTCGACCTCCGATTGACGCCAAGCTTCACTCATAAAGTTCCTGCCTACGGCTGCGGACCAGAAGTCCGACGGCTGGGTTCGCCGTCGATGAACTCGGAAGAATCCGTCACGACGACGACTTGTTTGGAAAGCGGGATTGGAGATCACCACGCTCACGGCGGAGACCTGAAGCTTCTCAATCTTTTCATTTGA 705 0.5645 MSCNGCRVLRKGCSENCILRPCLQWIDNPQAQGHATVFVAKFFGRAGLMSFISNVPPNQRPALFQSLLFEACGRTVNPVNGAVGLLWSGNWHVCQTAVETVLRGGTLKPMPELVGLDAPAPATDEASEGEVTCNGMWRIRDPNSNLRCDNKVSPGGGLRLSDDSAMLQTTDLDLRLTPSFTHKVPAYGCGPEVRRLGSPSMNSEESVTTTTCLESGIGDHHAHGGDLKLLNLFI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0273 234 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Alju12g0273 234 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Alju12g0273 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0273 Alju-ChrAlju12 3433556 3434395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0273 1 233 AS2 family AT3G49940 55.039 9.05e-83 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Alju12g0273 LOB 1.4e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g0273 12 3433556 3434395 Alju09g2028 09 44033128 44033934 CCT
Alju09g2028 09 44033128 44033934 Alju12g0273 12 3433556 3434395 ECH
Alju12g0273 12 3433556 3434395 Alju12g0273 12 3433556 3434395 ECH