Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0248 ATGGGAGACAATGGTGTGTCACCCTGTGCCTTGATGGATTCGTCCATAGATTTTGATTACATGGACGATCTTTTCTCAGATGGATGCTGGTTGGAAGCCGCTGCAGATGGATCTGATTTCTTGCTGCGAAGCCCTACTGCGTCCAATCCCATCCTTGACTCATCATTTTCATGGCCTGCCTTGGACACTAATAGGCATGTGAGTCTAGAACAAAGGCAGAGTCCGTTGGTTGGCGACTACCAGGAAACACAAACTGATAATACTCGATCGGTTGGCAAGGACAAGGACATAATAGATGTTGCTGCGACTTTTAATCTGTCTGAAATTCGTTCAGCTGAAAGCTCAGAAGTCGTTAGGAGGTGGTGGATTGGACCTATGGCGAATCCAAGCCCTGAATGTTCTGTGTTGGAGAGACTAATTAAGGCACTTATGTATATCAGAGATTTCAATAGAGACAAAGACATGCTTTTACAATTATGGGTGCCTGTTAATAGAGAGGGTGGGAGGATTCTAAGCACTCGTGATCTTCCCTTCTCACTCGAAAGCAGCGGTCCAAATCTTGGCAAGTACCGAGAAATCTCTGCCAAATATCATTTTCCAGCCGATGGATGTTCTAGGGGCTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAGGTTCCTGAGTGGACTCCTGATGTTCGATTTTTCAGGAGCGATGAGTACCCTCGAGTTGACCATGCTCAAGAGTATGACGTGCGTGGATCTTTAGCTCTTCCAGTTTTTGAGCAAAGTAACAACATTTGTATTGGTGTTATTGAGTTTGTAATGACAGACCAGAAGATTAAGTATTTCCCTGAACTTGAGAGTGTTTGTAAAGCACTTGAGGCTGTTGATCTTAGAAGCAGAAATATCTCAGGTATACAGAATGTGAAGGCATGCAACAATTCCTATGAAGCTGTACTGCCCGAGATCCAAGAGGTTTTGAGATCAGCATGTGAAATGCACAAATTACCTTTAGCTCAAACCTGGGTTCCATGTATCAAGCAGGGCAAAGAAGGGTGCCGGCACACAGATGATAATTATCTACACTGTATATCTCCTGTTGAGCATGCTTGTTATGTTGGTGATCCTTGTGTCCAGGCTTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAACGTCAAGGTGTCACTGGTGAAGCTTTTATAACCAATCAACCATGCTTCTCAACTGATGTAACTTCCTTTAGCAAGATAGATTATCCACTGTCTCATCATACAAGGATTTTTGGGTTGCGAGCTGCTGTTGCTATACGCCTACGAAGCATCCATAACAGTGCAGACGACTTTGTACTTGAGTTCTTCTTGCCTGTAAATTGCACTGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATACAGAGGGTTTGCCGTAGCCTGCGGGTGATTTCCAACAAAGAATTGGAGGAGGAAGACAGCTTACCAATTGATGAAGTGACAGTCCCTGCAGAGAGTAGATCTGCTAGGATGGAGTTCCAACAATGCAGGAAGGTTGCTTCACATGGCACCAACGAAAAGTCAAATGAAAATTTGACTAGACAGGTGTCTAACCAGACTCAGCAAGAAGACTTTATTTTAAAAGGAAACCTTGACCGTGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTGCCGATTGTATGTTTAAGTAAAACGGGAGACAAAAGACGGACCAAAGCAGAGAAAACTATCACCCTGCAAGTTCTTCGCCAATATTTTGCAGGAAGCCTAAAAGATGCTGCAAAGAATATTGGAGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTAGTGCTTTTCAGATAGATTCTTTCTACTCAAAGTTTCCGGAGCTAGCATCTCCAAATTTGCCAGGAAGCAGCTTGTTCTCAACTTCAAAACAAAGCAATCTTCCAAATCCATCAAGCACAAGGCCTGATACTGGCTTGCTGAGCCCAGAAGCACCCTCATCTTCATGCAATCAAAGTTCCAGTTCAAGCCATTCCTCTTCCAACATGTCAGAGTTACAGCTTCATACACAAAATGTTGCAGGCGGAAAAGTTCCTAGGTTTAGAGAAGATTCTGCTGATGGGGTTATGAAGAGGGTTCCAAGTGAAGTAGGGCTAAAAAGCTTAAGTCAAGATACAGCAGAGCTCTTGCCAGCATCCCAAAGCCAGGAAACACCTTGTGTACATCCAAAAACTGTGTTGAAAAGCAGTCTTAACGTACATCAAAAAGAAGATACTCAGAGAGTAAAAGTCGCTTTCAGAGAAGAGAAAACCCGGTTTCGGATGCCAAAGAATTGGCGTTATGAAGATCTTTTGTGGGAAATTGCTTGGCGGTTCAACATAGATGACATGCGCAAATTCGATATCAAGTATCTAGATGATGACTCTGACTGGGTTTTGCTAACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAACATTCTCAGAGCAGTACCATCAAACTTTGCCTTCTGGATCGTAAATCATAG 2637 0.4323 MGDNGVSPCALMDSSIDFDYMDDLFSDGCWLEAAADGSDFLLRSPTASNPILDSSFSWPALDTNRHVSLEQRQSPLVGDYQETQTDNTRSVGKDKDIIDVAATFNLSEIRSAESSEVVRRWWIGPMANPSPECSVLERLIKALMYIRDFNRDKDMLLQLWVPVNREGGRILSTRDLPFSLESSGPNLGKYREISAKYHFPADGCSRGLVPGLPGRVFKEKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGSLALPVFEQSNNICIGVIEFVMTDQKIKYFPELESVCKALEAVDLRSRNISGIQNVKACNNSYEAVLPEIQEVLRSACEMHKLPLAQTWVPCIKQGKEGCRHTDDNYLHCISPVEHACYVGDPCVQAFHEACSEHHLLKRQGVTGEAFITNQPCFSTDVTSFSKIDYPLSHHTRIFGLRAAVAIRLRSIHNSADDFVLEFFLPVNCTDSEEQKKMLTSLSMIIQRVCRSLRVISNKELEEEDSLPIDEVTVPAESRSARMEFQQCRKVASHGTNEKSNENLTRQVSNQTQQEDFILKGNLDRGWECSSFGEGGLPIVCLSKTGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLFSTSKQSNLPNPSSTRPDTGLLSPEAPSSSCNQSSSSSHSSSNMSELQLHTQNVAGGKVPRFREDSADGVMKRVPSEVGLKSLSQDTAELLPASQSQETPCVHPKTVLKSSLNVHQKEDTQRVKVAFREEKTRFRMPKNWRYEDLLWEIAWRFNIDDMRKFDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKLCLLDRKS 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0248 878 SUPERFAMILY CAD & PB1 domains 784 875 - -
Alju12g0248 878 CDD PB1_NLP 795 873 IPR034891 -
Alju12g0248 878 SMART PB1_new 793 876 IPR000270 GO:0005515
Alju12g0248 878 MobiDBLite consensus disorder prediction 671 719 - -
Alju12g0248 878 Gene3D - 789 874 - -
Alju12g0248 878 ProSiteProfiles RWP-RK domain profile. 569 650 IPR003035 -
Alju12g0248 878 Pfam PB1 domain 794 873 IPR000270 GO:0005515
Alju12g0248 878 PANTHER PROTEIN NLP8 105 873 IPR045012 GO:0003700
Alju12g0248 878 ProSiteProfiles PB1 domain profile. 793 876 IPR000270 GO:0005515
Alju12g0248 878 Pfam RWP-RK domain 582 630 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0248 Alju-ChrAlju12 3178829 3182261 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0248 16 873 NLP Transcription Factor Family AT1G20640 48.848 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Alju12g0248 PB1 4.6e-20 CL0072