Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0230 ATGGTCATTGATAGCAGGAAGGATATGGATCGGATCAAGGGTCCATGGAGCCCCGAGGAGGACGACGCCTTACAGAAGCTGGTAGAAAAGCACGGACCCAGGAACTGGTCTCTGATCAGCAAGTCCATTCCGGGTCGGTCTGGCAAGTCTTGTCGGCTCCGATGGTGCAATCAACTTTCTCCTCAGGTGGAGCACCGACCTTTCTCGCCGGAAGAGGATGAGACTATTATTCGGGCTCATGCCCGATTCGGCAACAAATGGGCAACCATAGCCCGGCTTCTGTCGGGTCGGACCGATAACGCCATCAAGAACCACTGGAACTCCACCTTGAAGCGCAAGTGTGCATCCATGATGATGGATGAAACCACCGCTACTGGCGCCGGTGGTGGAGGATTCGACGGCAGTTTCAGCCCCCAGCCACTGAAGAGATCGGTGAGTGCCGGAGCTGCTATACCGGTTTCGACCGGTTTTTACGTAAACCAGCAGACTCCGAGTAGCCCGTCCGGATCCGACGTTAGCGATTCTAGTGTGCCGGTAGTTTCTTCTTCCCATGTTTACCGGCCGGTGGCGAGAACCGGCGGAGTTCTACCTCCCGTAGAAACGACGTCGTCTTCAAATGAACCTACTACCTCATTATCCCTATCACCTCCTGGTGTAGACTCTTCCGAAGTTTCCAATCGTGCTTCAGAGTCAACACATGCTATTCCGTTAGCGAATACTGTTCGTTTGTTACCGGCTATGGTTTCAGCCGTGGCGTCCTCCGCAGGTCCACCGCTTCCTCCGGTGTCGGCGCAGCAGCAGGTTCATATAGGCCTAGGTGATCGGAGGAGCGGTGATGGCGTGTCACCGGCGGCGAACACAAACAGGGCAGCACCATTCAATTTCAGTGCAGAGTTGCTAGCTGTGATGCAGGAGATGATAAGAACAGAGGTGAGGAGTTATATGGCGGGACTGGAAAAGAGGCAGCTCATGGATTTGCGAACGCTTCAGTGA 993 0.5458 MVIDSRKDMDRIKGPWSPEEDDALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMMDETTATGAGGGGFDGSFSPQPLKRSVSAGAAIPVSTGFYVNQQTPSSPSGSDVSDSSVPVVSSSHVYRPVARTGGVLPPVETTSSSNEPTTSLSLSPPGVDSSEVSNRASESTHAIPLANTVRLLPAMVSAVASSAGPPLPPVSAQQQVHIGLGDRRSGDGVSPAANTNRAAPFNFSAELLAVMQEMIRTEVRSYMAGLEKRQLMDLRTLQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0230 330 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Alju12g0230 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Alju12g0230 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Alju12g0230 330 SMART sant 64 112 IPR001005 -
Alju12g0230 330 SMART sant 12 61 IPR001005 -
Alju12g0230 330 MobiDBLite consensus disorder prediction 1 20 - -
Alju12g0230 330 CDD SANT 15 57 IPR001005 -
Alju12g0230 330 FunFam MYB transcription factor 13 64 - -
Alju12g0230 330 Gene3D - 66 126 - -
Alju12g0230 330 FunFam Transcription factor MYB44 67 113 - -
Alju12g0230 330 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Alju12g0230 330 CDD SANT 67 110 IPR001005 -
Alju12g0230 330 MobiDBLite consensus disorder prediction 191 231 - -
Alju12g0230 330 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Alju12g0230 330 PANTHER MYB PROTEIN-RELATED 13 203 - -
Alju12g0230 330 MobiDBLite consensus disorder prediction 197 231 - -
Alju12g0230 330 Gene3D - 12 64 - -
Alju12g0230 330 Pfam Myb-like DNA-binding domain 16 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0230 Alju-ChrAlju12 2823109 2824101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0230 5 320 MYB Transcription Factor Family AT4G37260 51.097 1.65e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju12g0230 Myb_DNA-bind_6 1.8e-18 CL0123