Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0228 ATGACCATGTTTCAGTTCGCTCTCTCATCTTCTCTGAAGAAGATGGCTCTCACAAAAGATGCCCAGAACTCGTTGTTCCTTGATGCTCTTCTTTGTGAGGAAGATGGTTTTACAGAGGATGGTACTGGAGGAGAGAGTTCTTGGGAAAAGTCTCCATCTTTACCTTTGATTTTGTTGGATAATGATGTTTTTTTCTTGGACGACGACGGTCTTGCCTCTCTAATCTCAAAAGAAAGAGGGACCCATTTCGGTCTTGGTAATATAATAATCGATGAGCCTCTAATAAAAGAAGCTCGCAGAGAGGCGGTGTTCTGGGTTTTGAAGGTTTCGGCTCACCACAATTTCTCTGCTCTCACCTCTGTTCTTGCTGTGAACTACTTCGATCGGTTCATCCAAAGTCTGAACTTTCAGCAAGATAAGTCTTGGACGACACAGCTCGCAGCACTTGCTTGTTTAAATGTCGCTGTAAAAATGGAGGAGTCACAAGTTTCACATCTCTTAGACATTCAAGTGGAGAAATCGAAGTATGAATTTGAAGCAAAAGATATAAACAGAATGGAGCTTCTAGTGTTATCAACTCTTCAATGGAGGATGAATCCTGTGACTCCAATCTCCTTCTTAGGACACATTGTGAGATCACTCCGTTTAAAGAGCTACTTGCACTGTGAATTCCTCTGGCGATGCGAACGCCTTCTGCTTTTAGTGCTTCCAGATTCACAAGTTATGAGTTATCTTCCTTCCATAATTGCTGCTGCTACAATGATCCATGTGATCCGAGAGATTGAACCATTTAATGTGGTGGAATACAGAAACCAGCTCTTGGCTTTACTCAAAATCAGTGAGGAAAAAGTGAACCAGTGCTACAAACATATTCTGAAAATACTATGTTGTCACCAAGACATTGAAAATCTTCACAGTAGACGCAAACGCCTATGTGAACCGAGAAGCCCAGATGATGTGATCGATGCTTTCTTCAACAATGATAGTTCGAATGATTCGTGGGCCTTAGGAACAGCCTCAGTATCCGAGAAGCCAATGTTGAAAAAGAACCGATCTCAGGAACAGTCTATGGTTGTTATTAATAAGGTCCCTCCATAA 1098 0.418 MTMFQFALSSSLKKMALTKDAQNSLFLDALLCEEDGFTEDGTGGESSWEKSPSLPLILLDNDVFFLDDDGLASLISKERGTHFGLGNIIIDEPLIKEARREAVFWVLKVSAHHNFSALTSVLAVNYFDRFIQSLNFQQDKSWTTQLAALACLNVAVKMEESQVSHLLDIQVEKSKYEFEAKDINRMELLVLSTLQWRMNPVTPISFLGHIVRSLRLKSYLHCEFLWRCERLLLLVLPDSQVMSYLPSIIAAATMIHVIREIEPFNVVEYRNQLLALLKISEEKVNQCYKHILKILCCHQDIENLHSRRKRLCEPRSPDDVIDAFFNNDSSNDSWALGTASVSEKPMLKKNRSQEQSMVVINKVPP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0228 365 FunFam CYCLIN D32 200 289 - -
Alju12g0228 365 CDD CYCLIN_AtCycD-like_rpt2 201 289 - -
Alju12g0228 365 Pfam Cyclin, C-terminal domain 201 300 IPR004367 -
Alju12g0228 365 CDD CYCLIN_AtCycD-like_rpt1 98 196 - -
Alju12g0228 365 FunFam D6-type cyclin 87 199 - -
Alju12g0228 365 SUPERFAMILY Cyclin-like 64 199 IPR036915 -
Alju12g0228 365 Gene3D - 96 199 - -
Alju12g0228 365 SMART Cyclin_C_2 201 319 IPR004367 -
Alju12g0228 365 Pfam Cyclin, N-terminal domain 96 199 IPR006671 -
Alju12g0228 365 SUPERFAMILY Cyclin-like 184 300 IPR036915 -
Alju12g0228 365 Gene3D - 200 291 - -
Alju12g0228 365 SMART cyclin_7 205 293 IPR013763 -
Alju12g0228 365 SMART cyclin_7 104 192 IPR013763 -
Alju12g0228 365 PANTHER CYCLINS 99 292 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0228 Alju-ChrAlju12 2761987 2763345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0228 15 357 Core Cell Cycle Gene Families AT5G67260 45.479 2.13e-89 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g0228 12 2761987 2763345 Alju09g2087 09 44474796 44476227 CCT
Alju09g2087 09 44474796 44476227 Alju12g0228 12 2761987 2763345 ECH
Alju07g1933 07 45628155 45629545 Alju12g0228 12 2761987 2763345 ECH
Alju12g0228 12 2761987 2763345 Alju12g0228 12 2761987 2763345 ECH