Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0226 ATGGCCCCTAGCCTTTTCCTTTTCCTTTTCGTCTCTGCTTTATTGTTGGTTTCGTCAATCTTCTCTATAATAGCTGTATTCATCTATCTTAACTTTGAAGAACTTACTATGGAGGGGAAGATAGAAACTGCAGAGAAAAAGGTGCTGGTTGATATTGTAAAATTGGCACAAAAAAGAGGAATGAAGGGTGCGCTAGGAGACTGGAAAAACTTCTTAATTAGTCATGATAAAAAGTTTGGGGCTCATTTAAGCGATCCAGCAAAGAAGTCCCATGAGACATTGGTTGCATTTCTAAAAACCTTTTCAAAGCAGGTTGATTTAAAGTTTATTGATACCATCTTGCGACGCCATTCTAATCAGGACCTATTTCAGCTATTCAATGATAAGTCTCATGACACCCCTGAGCAGAGGCTTGTCCAAAAAACTTTGCAGCACCCATTGTATCCATTGGATTATGCATTTGGAGAACTTGATGAGGAGTGGATGGTTATAAACCTTAAGAAAAAGAACAGGTTGCTGAAGTTTACCAAGATGGTTGCTATTGATTGTGAAATGGTTCTCTGTGAGGATGGGACTCAAGCTGTAGTGAGTGTCTGTGTGGTTGATCGCAATTTGAAGGTCAAACTTAAAAAACTTGTACAACCAAACAAAGCAATTGCTGACTACAGATCAGAGATTACTGGGGTCTATCCTCAGGATCTTGAAGGCGTTACTTGCTCATTGGCCAAGATACAAAAATCTTTGAGTAGGATGTTAATGGATGGAACAATATTAGTGGGACATAGTTTGCATAATGATTTATGCGCGCTGAAATTAGATTATGTTAGAGTGATTGACACTTCATATATCTTCCAATACTCAGATGGTAATGCTCATAGGAGACCGTCTTTGAATACTTTATGTAAGGCTGTGTTAGGTTATGAACTTCGGGAAACAAGTGCTTCACATAATTGTCTTGATGATGCAATGGCAGCGATGAAGCTTGTTCTTGCTAAGATAGAGCGAGGTGTTGATAATGCAATTCCCTTGCGTCAAGAGCCTGTTCTTAAAAGTGAAATGGCTAAGCTGCTTCTTCACAGGATATCATCTGGGGTTAATAGTCAAGAACTGTATAAAGTTATTCCCGGGGACTACAATATAGAACTTAGGCCCCCTAAAGGGAAAGAATATTCTGCCCTCGCCATATTCGAGAATCCAAAAGAGGCCCATGAGGCCTTTGAAAGTCTCCAAGGTGACCAAGAAACGGATTCAGGTGGACGTCCACAGAAGCTTGTCACATTCCGGTGCAGTACAGGTGTGAAAACCAGTATATGTGTTCGGAAAATGTCACCTGATCGCCCCAATGGCTCCAAGAGAGCGTTAGAAGCGGACGAAACAACAGTGTTGAAGAAAGCAAAGATGGATCCTGAAATTGACGGGACGGTATCGACAAAAGCTAAGATGGATCCTGAAATTGAAGGGAATGCGACGACCATCTCTAACAAGTGTGACACCCACTTGAATGAGATTGAAGCTCTAAATCAACGGCTGAAAGAAGAGATTGAATCGCTGAAGCAACAGCTGAAACAAAAGGATTTGGAAATCGACATATTAAATAAAATGGTTTCCTCCTTGAACAAGAAATTAAGGAAATGA 1635 0.4049 MAPSLFLFLFVSALLLVSSIFSIIAVFIYLNFEELTMEGKIETAEKKVLVDIVKLAQKRGMKGALGDWKNFLISHDKKFGAHLSDPAKKSHETLVAFLKTFSKQVDLKFIDTILRRHSNQDLFQLFNDKSHDTPEQRLVQKTLQHPLYPLDYAFGELDEEWMVINLKKKNRLLKFTKMVAIDCEMVLCEDGTQAVVSVCVVDRNLKVKLKKLVQPNKAIADYRSEITGVYPQDLEGVTCSLAKIQKSLSRMLMDGTILVGHSLHNDLCALKLDYVRVIDTSYIFQYSDGNAHRRPSLNTLCKAVLGYELRETSASHNCLDDAMAAMKLVLAKIERGVDNAIPLRQEPVLKSEMAKLLLHRISSGVNSQELYKVIPGDYNIELRPPKGKEYSALAIFENPKEAHEAFESLQGDQETDSGGRPQKLVTFRCSTGVKTSICVRKMSPDRPNGSKRALEADETTVLKKAKMDPEIDGTVSTKAKMDPEIEGNATTISNKCDTHLNEIEALNQRLKEEIESLKQQLKQKDLEIDILNKMVSSLNKKLRK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0226 544 Gene3D - 174 343 IPR036397 GO:0003676
Alju12g0226 544 SMART exoiiiendus 177 338 IPR013520 -
Alju12g0226 544 SUPERFAMILY Ribonuclease H-like 178 333 IPR012337 -
Alju12g0226 544 FunFam Small RNA degrading nuclease 3 173 347 - -
Alju12g0226 544 Coils Coil 496 544 - -
Alju12g0226 544 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 47 344 IPR047021 GO:0004527
Alju12g0226 544 CDD REX1_like 179 330 IPR034922 -
Alju12g0226 544 Pfam Exonuclease 179 328 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0226 Alju-ChrAlju12 2734457 2739304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0226 177 328 C2H2 Transcription Factor Family AT2G48100 32.948 2.74e-12 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g0226 12 2734457 2739304 Alju12g0226 12 2734457 2739304 ECH