LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju12g0224	ATGGAGCCAGCATCTGCGGATTCATCATCTCAGCCTACCAACTCAGCTCCTGATATTGTGCGTCATTCCACCAATGTTTCTGGACAAAATGACAGTGCCCATAACTCTGCACCCTCCTTATCGGCTACTGACAAATCATCCTCAGTGATTAATCTGAAATTTTCACGGTCCTTTGGAGCAACACAAGGGAACTCGCAGACTGGAGATACTGGGATGTCAAATTTTTCTTTCCTTACCAGTGGGCTTGGACGAATACTATCAATTCCTTCTGTTCGAAATGAGGCTGCTCCTTCCAACTCAGAAGCTGAGAAGCCTAATTTAATTGAATCGTTCACCAAAGGCTTTGTTGACTCTTCAAAGACTGCAGTAAAGAAGATGCAAGTAACGGCACGCCATATTGTCTCTCAAAACAAACGTAGATACCAGGATGGAGAGTTCGATTTGGATCTGGCATACATTACTGAAAATATAATCGCTATGGGATTTCCAGCTGGTGATTCCAGCTCTGGAGTTTTCGGATATATTGAGGGTTTCTATCGCAATCACATGGAAGAAGTGATTAGATTTCTCGAGACTCGTCATGAGGGAAAGTACAAAGTATACAATCTTTGCTCTGAGAGATTGTATGATGCATCACTATTCAAGGGGAAGGCTGCAAGTTTCCCATTTGATGATCATAATTGCCCTCCTATTGAACTTATAGCATCCTTTTGTAGAAGTACATATTCATGGTTAAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGCAAAGCTGGCATGGGGAGGACAGGGGTGATGATTTGTAGCCTTCTTTTGTTTCTTAAGTTCTTCCCAACTGCTGAGGAGGCCATTAATCTCTTTAACCAGAAAAGATGCATTGATGGAAAAGCTCTAGTTCTTCCTAGTCAGATTAGGTATGTCAAATACTTTGAACGGACTTTAACATACTTCAAAGGAGAAGTTCAGCCTGGACGAAGGTGCATGCTAAGAGGATTTCGGCTTCACAAATGCCCTTATTGGATTAGGCCTTCCATTACGATTTCCGATCATAACGGTAAGTTGTTGCATCCAAAACATTCTTTTCATGTGATTCTTTGTCATACTCTGAAGCTATGTTTGGATATCAGTCTATGGAAACCTATCTCACATTGA	1155	0.4139	MEPASADSSSQPTNSAPDIVRHSTNVSGQNDSAHNSAPSLSATDKSSSVINLKFSRSFGATQGNSQTGDTGMSNFSFLTSGLGRILSIPSVRNEAAPSNSEAEKPNLIESFTKGFVDSSKTAVKKMQVTARHIVSQNKRRYQDGEFDLDLAYITENIIAMGFPAGDSSSGVFGYIEGFYRNHMEEVIRFLETRHEGKYKVYNLCSERLYDASLFKGKAASFPFDDHNCPPIELIASFCRSTYSWLKEDIQNVVVVHCKAGMGRTGVMICSLLLFLKFFPTAEEAINLFNQKRCIDGKALVLPSQIRYVKYFERTLTYFKGEVQPGRRCMLRGFRLHKCPYWIRPSITISDHNGKLLHPKHSFHVILCHTLKLCLDISLWKPISH	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju12g0224	384	ProSitePatterns	Tyrosine specific protein phosphatases active site.	255	265	IPR016130	GO:0016311\|GO:0016791
	Alju12g0224	384	Pfam	Protein-tyrosine phosphatase	225	279	IPR000242	GO:0004725\|GO:0006470
	Alju12g0224	384	Gene3D	Protein tyrosine phosphatase superfamily	124	321	IPR029021	-
	Alju12g0224	384	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	152	319	IPR029021	-
	Alju12g0224	384	FunFam	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2	124	321	-	-
	Alju12g0224	384	PANTHER	PHOSPHATASE WITH HOMOLOGY TO TENSIN	116	356	-	-
	Alju12g0224	384	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	253	292	IPR000387	GO:0016311\|GO:0016791
	Alju12g0224	384	CDD	PTP_PTEN	149	313	IPR045101	GO:0016791
	Alju12g0224	384	MobiDBLite	consensus disorder prediction	1	45	-	-
	Alju12g0224	384	ProSiteProfiles	Phosphatase tensin-type domain profile.	139	318	IPR029023	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju12g0224	Alju-ChrAlju12	2727297	2732017	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju12g0224	3	359	Protein tyrosine phosphatase (PTP) family	AT3G19420	66.116	1.39e-172	493