Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0212 ATGGAAGCTGAACAAGCGGCTTTAGGCGCCAAGAAGAGAGGGGTCGAAGGAGAGAGAAGGTACAAAGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAAATCCGAGAACCCAACAAGCGTTCTCGGATTTGGCTCGGATCCTATTCTACACCAGTTGCTGCCGCCAGAGCCTACGACACCGCCGTTTTCTATCTCAGAGGACCTTCCGCTCGCCTTAATTTCCCGGACCTCCTTGCCGGAGAAGGCTGTGTGGCCGCCGCCGGTGATTTGTCGGCGGCTTCGATTCGCAAGAAAGCCATCGAAGTCGGCGCTAGGGTGGATGCCCTTCACTCGGCTCACCACCATCACCATCACCATCACCACCACGCGTCGGCGGAGGCATCGGAGCTCATGCCTCGCGGCGCAGGAGCGAGCGTGGTTGACCTGAACAAGATGCCGGAACCGGAGAATCCGGAGTGCAACTGA 471 0.586 MEAEQAALGAKKRGVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLAGEGCVAAAGDLSAASIRKKAIEVGARVDALHSAHHHHHHHHHHASAEASELMPRGAGASVVDLNKMPEPENPECN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0212 156 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Alju12g0212 156 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Alju12g0212 156 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Alju12g0212 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 153 - -
Alju12g0212 156 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Alju12g0212 156 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Alju12g0212 156 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Alju12g0212 156 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Alju12g0212 156 MobiDBLite consensus disorder prediction 112 132 - -
Alju12g0212 156 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Alju12g0212 156 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0212 Alju-ChrAlju12 2634048 2634518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0212 7 154 AP2-EREBP Transcription Factor Family AT2G23340 60.131 1.11e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju12g0212 AP2 9.6e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2100 09 44579985 44580548 Alju12g0212 12 2634048 2634518 CCT
Alju12g0212 12 2634048 2634518 Alju12g0212 12 2634048 2634518 ECH