Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0209 ATGTGGGATCTTAACGACTCGCCTGATCAGATAAACGACAACGAATCAGAAGGATGCTCTTCGATGAATGATGATAAAGGAAAGCGGGTCGACGGATCTGTCTCGAATTCAAGCTCATCCGCGGTGGTCATGGAGGACGGATCCGCCGAAGAAGACGGCGAGGGAAGCCGTGGGATATCAGACGGGAAAGGCAGCAAGACGATGAAGAAGATGAAGCGAAGCAGCAAAATATTCGGGTTTTGTGTGACCCATGAAGAGTCATCCATGGATAGTGCTGAACCCGACCCACCTGTAACCCGACAGTTTATGCCGGTGGAGGAGGCTGACGAAGTTTTCGCCGGCGCCGCCAGCACAGCCTTTCCTCGGTCCCACTGGGTAGGCCTAAAATTCAGCCAATCAGAAGCGAGAAACGGCGTCGTTGTCGGCGGCGACGGCGGCGGAGGTGGTGGGAAATCAGTGGAAGTAGGAGTATCGTCGTCGTCGCAGCCTATGATTAAGAAAAGCCGGCGAGGCCCACGGTCGAGAAGCTCACAGTATAGAGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCACATATGGGATTGTGGCAAACAAGTCTATCTGGGTGGATTTGACACAGCACATGCGGCTGCTCGTGCATATGATAGAGCGGCCATTAAGTTCCGAGGAGTAGAAGCAGACATCAACTTCAACATAGAAGACTATGAAGAAGACTTGAAACAGATGGGGAATCTGACGAAGGAAGAGTTCGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCTAGAGGAAGCTCCAAATATAGAGGTGTCACTTTACACAAGTGTGGAAGATGGGAGGCTCGTATGGGCCAATTTCTTGGCAAAAAGTATGTTTATCTGGGTCTATTTGACACCGAGATTGAAGCTGCCAGGGCTTATGACAAAGCAGCAGTAAAGTGCAATGGGAAAGACGCCGTTACCAATTTTGATCCCAGCATCTATGAAAATGAACTTCATGCTGAGTCCTCAGGTAATGCTGATCACAATCTGGATTTAAGTCTGGGCAATACGAGCTCAAATCATGGTGCTAGACAATCATTGGTAAATCTGTTACCATCAGAACAATTACCTTATAGAAGTAACATGGACTCTCATCGAAGAGAGGGGCATGGCGGTGAGAGTGAAACGCTGCGTCTTGCGGGTCAAACTCAGCTTCAATATTCTCAAGCCCCTGGTGAAACCCACAGATATGGTCCCCAAAAGACTTCGGGACAACCTCAAATTCTTCACCATTTCCCGAATTTTCACCACCCAAATTATCGGATTCCTTGCAGCAGTAATGGAAACGCAGGTCGTTTGGGAAGTGATCTTTCATTGTCAGTGAATGATCAAGAACGATGGCAATCTGGACGTTCTCAATACTTCTCCACTGCTGCAGCATCATCAGGATTCCCACAGCAGATCACTACCTCACACTCACAAGCTTGGCTGCAGAAAAATGGGTTCCACACTTCTCTCATGAGACCCTCCTGA 1524 0.4882 MWDLNDSPDQINDNESEGCSSMNDDKGKRVDGSVSNSSSSAVVMEDGSAEEDGEGSRGISDGKGSKTMKKMKRSSKIFGFCVTHEESSMDSAEPDPPVTRQFMPVEEADEVFAGAASTAFPRSHWVGLKFSQSEARNGVVVGGDGGGGGGKSVEVGVSSSSQPMIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAVKCNGKDAVTNFDPSIYENELHAESSGNADHNLDLSLGNTSSNHGARQSLVNLLPSEQLPYRSNMDSHRREGHGGESETLRLAGQTQLQYSQAPGETHRYGPQKTSGQPQILHHFPNFHHPNYRIPCSSNGNAGRLGSDLSLSVNDQERWQSGRSQYFSTAAASSGFPQQITTSHSQAWLQKNGFHTSLMRPS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0209 507 SMART rav1_2 270 333 IPR001471 GO:0003700|GO:0006355
Alju12g0209 507 SMART rav1_2 178 240 IPR001471 GO:0003700|GO:0006355
Alju12g0209 507 SUPERFAMILY DNA-binding domain 177 235 IPR016177 GO:0003677
Alju12g0209 507 SUPERFAMILY DNA-binding domain 269 329 IPR016177 GO:0003677
Alju12g0209 507 CDD AP2 178 235 IPR001471 GO:0003700|GO:0006355
Alju12g0209 507 FunFam AP2-like ethylene-responsive transcription factor 269 329 - -
Alju12g0209 507 ProSiteProfiles AP2/ERF domain profile. 178 234 IPR001471 GO:0003700|GO:0006355
Alju12g0209 507 PRINTS Ethylene responsive element binding protein signature 309 329 IPR001471 GO:0003700|GO:0006355
Alju12g0209 507 PRINTS Ethylene responsive element binding protein signature 271 282 IPR001471 GO:0003700|GO:0006355
Alju12g0209 507 ProSiteProfiles AP2/ERF domain profile. 270 327 IPR001471 GO:0003700|GO:0006355
Alju12g0209 507 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 413 - -
Alju12g0209 507 MobiDBLite consensus disorder prediction 50 68 - -
Alju12g0209 507 MobiDBLite consensus disorder prediction 1 70 - -
Alju12g0209 507 MobiDBLite consensus disorder prediction 155 178 - -
Alju12g0209 507 Gene3D AP2/ERF domain 269 328 IPR036955 GO:0003700|GO:0006355
Alju12g0209 507 Gene3D AP2/ERF domain 177 236 IPR036955 GO:0003700|GO:0006355
Alju12g0209 507 FunFam AP2-like ethylene-responsive transcription factor 177 236 - -
Alju12g0209 507 CDD AP2 269 329 IPR001471 GO:0003700|GO:0006355
Alju12g0209 507 Pfam AP2 domain 178 226 IPR001471 GO:0003700|GO:0006355
Alju12g0209 507 Pfam AP2 domain 269 316 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0209 Alju-ChrAlju12 2585960 2588840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0209 1 507 AP2-EREBP Transcription Factor Family AT4G36920 53.065 5.27e-136 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Alju12g0209 AP2 1.3e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2103 09 44603550 44606053 Alju12g0209 12 2585960 2588840 CCT
Alju12g0209 12 2585960 2588840 Alju12g0209 12 2585960 2588840 ECH