Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0203 ATGATGAACCATCAAGGAGGAATGAGTCACTCAAATTGTAATGCTAACAACCAAAACAAGGTTAATCATCAGTCAACTGGAGCACTGGAATTTCTTCCTGCCGCAAGTTCCCTTGCTGCAGGAGGATATCAAAGGTTCCCTGATCAGGTTTTGGGGTCAAATTATGTCAGTCCAAGTATTGGTTGCAGTGCTGATGTTGCTCCTCAAAATGTTGACTCAGGCGCAGAATATGCTGGGAACAATTGTTACAACAATTTGAATATGTCTTTGACTTTAGGCCGTCATTCCTATGGACCGGAAAATGAGAATACCAGCAACTCTTGTACAACTGTAATTGATCATGGAAGATCAAGTTCTACAGTGCAAGAGCAAGGTTTGAACAGTGGCTCAATGTATATGAGGCGTTTATCCTGCAAGAGAAAGTCTCCTGAACATACTGTCAGAGAATTGTTAGTAGGTGAGAGTTCTACCGCAGCTGCACATACTGGAACTTCCAAACGGCAGGCTTCTGAAGTCTATGGCAGCAATGGCCTAAACATATCTACTCCTTGTACTGATCCTGTCAATCATCAAGAACAGTCTGAGACCATTATTGGTCATGGCACTATAAGGCCGGTTTCTGATATACGGCATTTGAACGGAGCCAGATTATCTGAAAACTTCCGAAGTAACATTCATCATCGTACAGCTGCGAATCAACAAGCTTTTCTACCAACCAGCATTTTGTCATCAGGTTACATGAGGAATGCTCATATCCAGTTAGCCAGTCAGTCACCTTTGTATGGTCAAGACAATTATCCCCCTTTCTTCAGGTCTGCAGAAAGAGTTATTAGTCCAATTTCCTCAGTGCAGCCTGATGAGCACGTTCCTTATTTTCATGAAACTTCACAGGCTCCCCCCTGCATTCACATGGTGAGATCAAGTAGTGGTTTTTCTTCATTTTTGCCTGTCCATGCTACAGCGGAAAGTGAGGCTGTGGCACCCTTTCATTACCCAAGAAACATAAATGAAAACATCATGCTTAGCCACCAAATTGGAATGAGAAATTGGGCACATGATGCGAGAAACTCGCACTTTGTGAATGAAACTGCAAACTTCCCTGGAAATTTTTTCTGTCCCCTTCATGGTTTTGTTCCTGATACGATTCATTCAGAAAATGCCCCGGTTTCCTTCCCAGGGTTCAATTTTGCTGATCCTTATGCACTGACAACATCAAGAATTGTGAATCATCCTGTGCTTGCAACTACTGGTTTGCCTTGGCATAGTTACAGCCCAGCGGAAGTAGTTTTGCAAGAAATGGGCTATGCTGTTGGATTTGATAACGCTGTATCTCAGAATCAGCATATATCGGGAGCAATATCTGAGAACCATGCTGCTTCTTATTGTACATGGTCACTTGCTAATGCTCAAATTAGTATGGGGCTGATGCCTGAGGATCTGCATACATCAGAAGCAAGATTCGAGAATCAAGATATTTATCACCTTTATCATAATTTTTGGTCACCTTCTAATGCTCGAAATAGAAGGAGGCTGAGTCTTGAGCTTCACTATCGCCTGGGACTTCTGCACAGTGCTGACCCGTCACGGCCTGTGATCATTCCACGGGAATTGATGATGTTGGACCATTCAGTTGTAATGGATTTAGTTATGGGGCTTCACAATGAAGATGAACCGCATTTTGATTCAGACAACTGGAATAATGAGGATGCTGGCGGACCAGAGGCGGGGCTGAGTGAGGAAATGGTTCTTGGCCAGCTTAGCCAGGAAAAATTCCAGTCCATCCCAGATGGGTCTGCGGAAAATGAATGCTGCTGCATTTGTCAGGAGGAGTACCAAGAAGATGAAGATCTGGGTAAGCTGTGGTGCGGCCACAGGTTTCATGCAGACTGTATCAAGCCATGGCTGGAGCTGAAGAACGTCTGCCCCATTTGCAAACAAACTGCACTTCCTTTTTGTGATGATTCTCTTTAA 1971 0.4378 MMNHQGGMSHSNCNANNQNKVNHQSTGALEFLPAASSLAAGGYQRFPDQVLGSNYVSPSIGCSADVAPQNVDSGAEYAGNNCYNNLNMSLTLGRHSYGPENENTSNSCTTVIDHGRSSSTVQEQGLNSGSMYMRRLSCKRKSPEHTVRELLVGESSTAAAHTGTSKRQASEVYGSNGLNISTPCTDPVNHQEQSETIIGHGTIRPVSDIRHLNGARLSENFRSNIHHRTAANQQAFLPTSILSSGYMRNAHIQLASQSPLYGQDNYPPFFRSAERVISPISSVQPDEHVPYFHETSQAPPCIHMVRSSSGFSSFLPVHATAESEAVAPFHYPRNINENIMLSHQIGMRNWAHDARNSHFVNETANFPGNFFCPLHGFVPDTIHSENAPVSFPGFNFADPYALTTSRIVNHPVLATTGLPWHSYSPAEVVLQEMGYAVGFDNAVSQNQHISGAISENHAASYCTWSLANAQISMGLMPEDLHTSEARFENQDIYHLYHNFWSPSNARNRRRLSLELHYRLGLLHSADPSRPVIIPRELMMLDHSVVMDLVMGLHNEDEPHFDSDNWNNEDAGGPEAGLSEEMVLGQLSQEKFQSIPDGSAENECCCICQEEYQEDEDLGKLWCGHRFHADCIKPWLELKNVCPICKQTALPFCDDSL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0203 656 SMART ring_2 604 644 IPR001841 -
Alju12g0203 656 MobiDBLite consensus disorder prediction 1 20 - -
Alju12g0203 656 ProSiteProfiles Zinc finger RING-type profile. 604 645 IPR001841 -
Alju12g0203 656 SUPERFAMILY RING/U-box 599 649 - -
Alju12g0203 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 567 649 IPR013083 -
Alju12g0203 656 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 101 649 IPR045191 GO:0061630
Alju12g0203 656 Pfam Ring finger domain 604 645 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0203 Alju-ChrAlju12 2464145 2469656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0203 536 649 C3H Transcription Factor Family AT2G15530 40.800 9.74e-21 95.1