Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0202 ATGGGAGATATGTACGGAAATGGAAAGAGTAGCATTATTCTTCCTCCTTCGTCTTCTTCTTCAACCTCACCCTCCGACGAATTTTCCCTTTTTCTGCATCAGATTCTCCTCCCTACCTCCTCCGCCGCCGTATCGCCACCGTCTTCCCTCCTCACCCATCACATGCCTGAGAACGCTCCTAACATTTCTGAGCATGAAAATGCAAGCCTTTCGTACCCATCTTCTCTGCTTCAAGATGTAATCTCAGGTTTTGATTCTGCCTCTAAAAACCATGCCTTTCTCTCGTCTTATATCAAGGGAGGTTCTGCTGCTAACGTGTCTTCCTCATCGGTCGGAGTAAGTGGGAATGAGACTGATGAGTATGATTGTGACAGTGAGGGTGGTACGGTTGAAGCAATGGGTGCCAAGTCAGTTCCTCCGCGTTCGTCGAAGAGAAGCAGAGCTGCAGAAGTTCATAACTTGTCTGAGAAGCGAAGGAGGAGCCGGATCAATGAAAAGCTGAAGGCTTTGCAGAATCTAATTCCAAATTCAAATAAGACTGATAAAGCTTCAATGCTTGATGAAGCTATTGAGTATCTTAAACAGCTTCAGCTTCAAGTCCAGATGCTGTCTTTGAGAAATGGATTGAATATGCTTCCTGAGGGCTTTGCCGAAGGCTTGCAGCCTCTGTACTTGTCTCAGATGAGAGTTGAATATGGAGAAGAAGAAGAAAACGGGTCCTGTCCTTTAAACTTATCTGCTACTAACAAACGCAATGTGCCCTCTCCATCAAATGTAATCAACTCAGAGACACCTTTTGGGTTGGATTCCCAAATCATAAGGCATCTAAGACCCTTTGAACTCACAGCATCATCTTTTGAGATATGCAGGGAGCACATATTGCAGCACCAGCAATTAATTGCAGAAGATTCAAACACCAATCCTTTGGGTGATTCTCAAGCTGTACGAGAATTTGAGTCAGGCGCGTTGGCTACAGTATCACTCTCCTTTGATAATAAGCAAAACAATCGAAGTGAAGGAGAATTCAAAGCATGCATTGCAAGAGATTAG 1050 0.4438 MGDMYGNGKSSIILPPSSSSSTSPSDEFSLFLHQILLPTSSAAVSPPSSLLTHHMPENAPNISEHENASLSYPSSLLQDVISGFDSASKNHAFLSSYIKGGSAANVSSSSVGVSGNETDEYDCDSEGGTVEAMGAKSVPPRSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLNMLPEGFAEGLQPLYLSQMRVEYGEEEENGSCPLNLSATNKRNVPSPSNVINSETPFGLDSQIIRHLRPFELTASSFEICREHILQHQQLIAEDSNTNPLGDSQAVREFESGALATVSLSFDNKQNNRSEGEFKACIARD 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0202 349 SMART finulus 153 202 IPR011598 GO:0046983
Alju12g0202 349 Coils Coil 186 206 - -
Alju12g0202 349 Pfam Helix-loop-helix DNA-binding domain 151 197 IPR011598 GO:0046983
Alju12g0202 349 MobiDBLite consensus disorder prediction 11 26 - -
Alju12g0202 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Alju12g0202 349 MobiDBLite consensus disorder prediction 46 65 - -
Alju12g0202 349 MobiDBLite consensus disorder prediction 111 159 - -
Alju12g0202 349 MobiDBLite consensus disorder prediction 1 26 - -
Alju12g0202 349 CDD bHLH_AtPIF_like 147 209 IPR047265 -
Alju12g0202 349 Gene3D - 142 205 IPR036638 GO:0046983
Alju12g0202 349 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 286 IPR031066 -
Alju12g0202 349 FunFam Basic helix-loop-helix transcription factor 142 205 - -
Alju12g0202 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 206 IPR036638 GO:0046983
Alju12g0202 349 MobiDBLite consensus disorder prediction 143 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0202 Alju-ChrAlju12 2455487 2458577 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0202 116 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.657 6.67e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju12g0202 HLH 1.9e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g0202 12 2455487 2458577 Alju12g0202 12 2455487 2458577 ECH