Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju12g0196 | ATGGAGCAGCGTAAACTTGTGGTTTTGGGTATTCCTTGGGATGTCGATACTGAGGGGTTGAAAGATTATATGAGCAAATTTGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGGTCAACTGGCCGATCTCGTGGTTTTGGATATGTTACATTTGCCTCAGTTGACGATGCTGAGAAAGCATTATCAAGCGAGCATGTTCTTGGCAATAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTAAAGAAAGTTACTAGAATTTTTGTGGCTAGAATTCCACCATCAGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGTGAGATAACAGATTTATACATGCCAAAGGACCAGGGCTCTAAATCGCACCGTGGAATTGGCTTTATAACTTTTGCTAATGCAGAATCTGTGGAGAATTTAATGGCAGACACTCATGAATTGGGAGGTTCTACTGTGGTGGTTGATCGGGCAACACCAAAGGAAGATGATTTCAGGCCTATTGGCAGAATGCCGCAAGGAGGGTATGGTGCATACAATGCATATATATCTGCAGCAACTCGATATGCTGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGATCAGTTTATGGAAGGGGAGAACCAGTTCGTGGGATGGGCAAAAAAATTTTTGTTGGCCGTCTTCCCCCTGAAGCAACTGCTGATGATCTTCGCCAGTATTTTGGAAGATTTGGCCGTATATTAGACGTATATGTTCCAAAGGATCCCAAGAGAGCAGGCCATAGAGGATTTGGTTTTGTAACTTTTGCTGAAGATGGTGTGGCCGAACGTGTCTCTCGGAGGCCTCATGAAATTTGTGGGCATCAGGTTGCTATAGATTCAGCCACACCTCTCGATGATGCTGGGCCCAGTTCAAATTTTATGATGAGCAGTGTGGATACTTTTGGGGGATACGGCGGTCCTATGCGCACCTATGGGAGGATGTATGGGAGCCTGGACTTCGATGATTGGGGTTATGGAATTGGCAGCGCGAGACCATCGAGAGCAGATTGGAGGTATCGGCCATACTAG | 1080 | 0.4546 | MEQRKLVVLGIPWDVDTEGLKDYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAEKALSSEHVLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGEITDLYMPKDQGSKSHRGIGFITFANAESVENLMADTHELGGSTVVVDRATPKEDDFRPIGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRGEPVRGMGKKIFVGRLPPEATADDLRQYFGRFGRILDVYVPKDPKRAGHRGFGFVTFAEDGVAERVSRRPHEICGHQVAIDSATPLDDAGPSSNFMMSSVDTFGGYGGPMRTYGRMYGSLDFDDWGYGIGSARPSRADWRYRPY | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju12g0196 | 359 | SMART | rrm1_1 | 93 | 164 | IPR000504 | GO:0003723 | |
| Alju12g0196 | 359 | SMART | rrm1_1 | 5 | 76 | IPR000504 | GO:0003723 | |
| Alju12g0196 | 359 | SMART | rrm1_1 | 225 | 296 | IPR000504 | GO:0003723 | |
| Alju12g0196 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 226 | 280 | IPR000504 | GO:0003723 | |
| Alju12g0196 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6 | 65 | IPR000504 | GO:0003723 | |
| Alju12g0196 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 94 | 160 | IPR000504 | GO:0003723 | |
| Alju12g0196 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 85 | IPR035979 | GO:0003676 | |
| Alju12g0196 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 80 | IPR000504 | GO:0003723 | |
| Alju12g0196 | 359 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 3 | 82 | - | - | |
| Alju12g0196 | 359 | Gene3D | - | 1 | 85 | IPR012677 | - | |
| Alju12g0196 | 359 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 2 | 83 | - | - | |
| Alju12g0196 | 359 | Gene3D | - | 222 | 304 | IPR012677 | - | |
| Alju12g0196 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 92 | 168 | IPR000504 | GO:0003723 | |
| Alju12g0196 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 224 | 300 | IPR000504 | GO:0003723 | |
| Alju12g0196 | 359 | Gene3D | - | 86 | 193 | IPR012677 | - | |
| Alju12g0196 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 224 | 324 | IPR035979 | GO:0003676 | |
| Alju12g0196 | 359 | FunFam | RNA-binding family protein isoform 1 | 221 | 304 | - | - | |
| Alju12g0196 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 89 | 187 | IPR035979 | GO:0003676 | |
| Alju12g0196 | 359 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 84 | 176 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju12g0196 | Alju-ChrAlju12 | 2391726 | 2396287 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju12g0196 | 6 | 292 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 22.300 | 1.42e-09 | 57.8 |