Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0189 ATGACGCAGCGATCGGCGCCGGCGCCGTTTCTGACGAAGACGTACCAGTTGGTCGACGATGAGCGCACCAACGACGTGATTTCGTGGAGCGAAAGCGGCGAGACTTTCGTGGTGTGGAAGCAAGCGGATTTTGCCAAGGATTTACTTCCTAATTACTTCAAACACAACAATTTCTCCAGCTTTGTTCGTCAGCTCAACACTTATGGATTCCGGAAGATAGTGCCCGACAAATGGGAATTCGCCAACGAATATTTCAAGCGAGGACGCAAGGAGCTGCTCTCGGGGATCAAACGCCGGAAGACTCTGGCTCAACCAGCCTCCGGGAAGTCCGGCAGCGGCGGAGGCGGCAACTCCGCGTCGAACTCCGGAGGCGGGGACGACGTGGGGTCCACGTCCACTTCGTCGGGTTCGGCAGAGGCGAAGACGGTTGCTCCAGAATACGCAGAGTTAACGGGAGAGAATGAGAAACTGAGAAAAGATAATGAAATACTGAGCTCGGAGCTGGCGGAGGCGAAGAAGCAGTGTGAGGAGCTGGTGGGTTTTCTGAGGGAGTACCTGAAAGTGGGGCCCGATCAGATTAATCGAATAATGATGCGGCAAGGAACAAGTGGGTCCAGCCGCGAAGAAGAAGGGGGACAAGAAGATGAGGACGAAACAGCAAAGGCAGTAGGTGAAGGCGGAGAAAGTCTGAAACTATTTGGGGTTTGGTTGAGAGGGGAGAAAGAAACGACGAAGGAGGAGGAAAAAATAAGGAGCATGAACAACCACCACCCCCACAACAACAAGAGAGGCCGCGAAGACCAAATGGCCTTTAGCGGGCCCCACCCATCCAAGGAGCTCAAGACTAGCGTTCATTTTGGAGCCTCTCCTGTGAATGTCATGATCAACTGA 891 0.5365 MTQRSAPAPFLTKTYQLVDDERTNDVISWSESGETFVVWKQADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGRKELLSGIKRRKTLAQPASGKSGSGGGGNSASNSGGGDDVGSTSTSSGSAEAKTVAPEYAELTGENEKLRKDNEILSSELAEAKKQCEELVGFLREYLKVGPDQINRIMMRQGTSGSSREEEGGQEDEDETAKAVGEGGESLKLFGVWLRGEKETTKEEEKIRSMNNHHPHNNKRGREDQMAFSGPHPSKELKTSVHFGASPVNVMIN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0189 296 Gene3D - 2 101 IPR036388 -
Alju12g0189 296 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 242 IPR027725 -
Alju12g0189 296 Coils Coil 147 174 - -
Alju12g0189 296 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g0189 296 Gene3D - 140 186 - -
Alju12g0189 296 FunFam Heat stress transcription factor B-4 2 100 - -
Alju12g0189 296 MobiDBLite consensus disorder prediction 97 154 - -
Alju12g0189 296 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g0189 296 MobiDBLite consensus disorder prediction 105 140 - -
Alju12g0189 296 MobiDBLite consensus disorder prediction 243 269 - -
Alju12g0189 296 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g0189 296 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g0189 296 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g0189 296 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g0189 296 MobiDBLite consensus disorder prediction 243 296 - -
Alju12g0189 296 MobiDBLite consensus disorder prediction 199 225 - -
Alju12g0189 296 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0189 Alju-ChrAlju12 2346468 2348360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0189 3 249 HSF AT4G36990 57.430 1.89e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju12g0189 HSF_DNA-bind 1.5e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2137 09 44858492 44861619 Alju12g0189 12 2346468 2348360 CCT
Alju12g0189 12 2346468 2348360 Alju12g0189 12 2346468 2348360 ECH